This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25678 (28 seq.)
>W131180758
ARNJ01000054
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
3443
3356
-
Ser
CGA
[ENA]
¡û
>W1711377545
MDZA01000077
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
34091
34180
+
Ser
CGA
[ENA]
¡û
>W1711377617
MDZB01000175
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
71084
70995
-
Ser
CGA
[ENA]
¡û
>W1711377639
MDZC01000054
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
26183
26094
-
Ser
CGA
[ENA]
¡û
>W1711726873
MTSE01000007
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
321287
321376
+
Ser
CGA
[ENA]
¡û
>W1712105574
NIRR01000012
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
16641
16554
-
Ser
CGA
[ENA]
¡û
>WENV181304903
OFID01012980
[OFID] marine metagenome; sea ice
174
261
+
Ser
CGA
[ENA]
¢þ
>WENV170986727
MWVX01072014
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
672
585
-
Ser
CGA
[ENA]
¢þ
>WENV170993551
MWWB01348304
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
246
333
+
Ser
CGA
[ENA]
¢þ
>WENV170993983
MWWC01067563
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
211
298
+
Ser
CGA
[ENA]
¢þ
>WENV170994235
MWWD01042910
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
449
360
-
Ser
CGA
[ENA]
¢þ
>WENV170998752
MWWJ01099955
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
191
278
+
Ser
CGA
[ENA]
¢þ
>C181175093
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
4717638
4717725
+
Ser
CGA
-
¡û
>C191087882
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
2019966
2019879
-
Ser
CGA
-
¡û
>C191154889
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
3608475
3608388
-
Ser
CGA
-
¡û
>W141734723
JNLX01000138
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
2345
2432
+
Ser
CGA
[ENA]
¡û
>W1910651895
LYMU01000073
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
177284
177197
-
Ser
CGA
[ENA]
¡û
>W1810089869
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
667620
667707
+
Ser
CGA
[ENA]
¡û
>W1810912381
QVLT01000013
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
4182
4095
-
Ser
CGA
[ENA]
¡û
>W1511543335
JZIR01000153
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
16226
16313
+
Ser
CGA
[ENA]
¡û
>W1511582933
LATM01000002
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
131961
132048
+
Ser
CGA
[ENA]
¡û
>C161061562
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
4731719
4731632
-
Ser
CGA
[Ensembl]
¡û
>C161070713
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
1116677
1116766
+
Ser
CGA
[Ensembl]
¡û
>C161077131
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
1790354
1790265
-
Ser
CGA
[Ensembl]
¡û
>W1710530559
FNOV01000005
Bacteroidota
Hymenobacter psychrophilus [FNOV]
233653
233566
-
Ser
CGA
[ENA]
¡û
>W1710553585
FOHS01000003
Bacteroidota
Hymenobacter actinosclerus [FOHS]
180992
180905
-
Ser
CGA
[ENA]
¡û
>W1710573737
FOXS01000003
Bacteroidota
Hymenobacter arizonensis [FOXS]
123622
123711
+
Ser
CGA
[ENA]
¡û
>W1710605405
FWWW01000053
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
35350
35437
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK