This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256826 (116 seq.)
>W1711020798
LQYU01000035
Bacillota
Anoxybacillus flavithermus [LQYU]
60996
60921
-
Phe
GAA
[ENA]
¡û
>W1711022824
LRAC01000008
Bacillota
Paenibacillus sp. DMB5 [LRAC]
484
409
-
Phe
GAA
[ENA]
¡û
>W1711022850
LRAC01000015
Bacillota
Paenibacillus sp. DMB5 [LRAC]
632
707
+
Phe
GAA
[ENA]
¡û
>W1711022891
LRAC01000127
Bacillota
Paenibacillus sp. DMB5 [LRAC]
161
236
+
Phe
GAA
[ENA]
¡û
>W131170208
ARFI01000008
Bacillota
Paenibacillus sp. HW567 [ARFI]
712097
712022
-
Phe
GAA
[ENA]
¡û
>W1711167367
LVWH01000094
Bacillota
Paenibacillus sp. P3E [LVWH]
924
999
+
Phe
GAA
[ENA]
¡û
>W1711167424
LVWH01000225
Bacillota
Paenibacillus sp. P3E [LVWH]
937
1012
+
Phe
GAA
[ENA]
¡û
>W1711167444
LVWI01000036
Bacillota
Paenibacillus helianthi P26E [LVWI]
123366
123291
-
Phe
GAA
[ENA]
¡û
>W1711167501
LVWI01000090
Bacillota
Paenibacillus helianthi P26E [LVWI]
14220
14145
-
Phe
GAA
[ENA]
¡û
>W1711169257
LVYY01000033
Bacillota
Paenibacillus sp. P32E [LVYY]
14241
14166
-
Phe
GAA
[ENA]
¡û
>W1711169294
LVYY01000077
Bacillota
Paenibacillus sp. P32E [LVYY]
834
909
+
Phe
GAA
[ENA]
¡û
>W1711169323
LVYZ01000027
Bacillota
Paenibacillus sp. P46E [LVYZ]
833
908
+
Phe
GAA
[ENA]
¡û
>W1711169363
LVYZ01000039
Bacillota
Paenibacillus sp. P46E [LVYZ]
109785
109710
-
Phe
GAA
[ENA]
¡û
>W1711632818
MPTB01000191
Bacillota
Paenibacillus borealis [MPTB]
1
76
+
Phe
GAA
[ENA]
¡û
>W1711677350
MRTL01000023
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
109053
108978
-
Phe
GAA
[ENA]
¡û
>W1711677988
MRTW01000005
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
214
289
+
Phe
GAA
[ENA]
¡û
>W1711678053
MRTX01000007
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
287531
287456
-
Phe
GAA
[ENA]
¡û
>W1711678131
MRTY01000023
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
3
78
+
Phe
GAA
[ENA]
¡û
>W131185960
ARVR01000007
Bacillota
Caldibacillus debilis DSM 16016 [ARVR]
149894
149821
-
Phe
GAA
[ENA]
¡û
>W131185995
ARVR01000041
Bacillota
Caldibacillus debilis DSM 16016 [ARVR]
774
699
-
Phe
GAA
[ENA]
¡û
>W131241291
BARH01000004
Bacillota
Anoxybacillus flavithermus NBRC 109594 [BARH]
216025
215950
-
Phe
GAA
[ENA]
¡û
>W131241316
BARH01000011
Bacillota
Anoxybacillus flavithermus NBRC 109594 [BARH]
103165
103092
-
Phe
GAA
[ENA]
¡û
>W131241348
BARH01000053
Bacillota
Anoxybacillus flavithermus NBRC 109594 [BARH]
844
919
+
Phe
GAA
[ENA]
¡û
>W141003720
ADWW01000001
Bacillota
Bacillus methanolicus MGA3 [ADWW]
471353
471428
+
Phe
GAA
[ENA]
¡û
>W141003732
ADWW01000001
Bacillota
Bacillus methanolicus MGA3 [ADWW]
366082
366007
-
Phe
GAA
[ENA]
¡û
>W141003739
ADWW01000002
Bacillota
Bacillus methanolicus MGA3 [ADWW]
894
969
+
Phe
GAA
[ENA]
¡û
>W141022528
AJTY01000074
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
486
561
+
Phe
GAA
[ENA]
¡û
>W141072299
ASPS01000001
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
627
702
+
Phe
GAA
[ENA]
¡û
>W141072347
ASPS01000083
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
11241
11166
-
Phe
GAA
[ENA]
¡û
>W141072709
ASPX01000045
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
779
854
+
Phe
GAA
[ENA]
¡û
>W141072730
ASPX01000107
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
2
77
+
Phe
GAA
[ENA]
¡û
>WENV181207621
OFAZ01007953
[OFAZ] metagenome; hydrothermal vent
768
843
+
Phe
GAA
[ENA]
¢þ
>WENV181208102
OFBA01023161
[OFBA] metagenome; hydrothermal vent
108
183
+
Phe
GAA
[ENA]
¢þ
>WENV181212742
OFBU01000005
[OFBU] metagenome; hydrothermal vent
8954
9029
+
Phe
GAA
[ENA]
¢þ
>WENV181215952
OFCB01000377
[OFCB] metagenome; hydrothermal vent
4781
4856
+
Phe
GAA
[ENA]
¢þ
>W08008632
ABLJ01000024
Bacillota
Geobacillus sp. WCH70 [ABLJ]
47168
47096
-
Phe
GAA
[ENA]
¡û
>W141263393
CCDG010000006
Bacillota
Paenibacillus camerounensis G4 [CCDG]
212813
212738
-
Phe
GAA
[ENA]
¡û
>W141263432
CCDG010000070
Bacillota
Paenibacillus camerounensis G4 [CCDG]
79895
79820
-
Phe
GAA
[ENA]
¡û
>W141265666
CCFJ01000046
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
958
1033
+
Phe
GAA
[ENA]
¡û
>W141265680
CCFJ01000057
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
394339
394264
-
Phe
GAA
[ENA]
¡û
>W141265689
CCFJ01000057
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
54496
54421
-
Phe
GAA
[ENA]
¡û
>WENV170005851
AMQJ01003086
[AMQJ] sediment metagenome; subsurface aquifer sediment
2933
2858
-
Phe
GAA
[ENA]
¢þ
>WENV170576129
FPKX01000006
[FPKX] hydrothermal vent metagenome; water
26747
26822
+
Phe
GAA
[ENA]
¢þ
>WENV170693454
LGVC01010530
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
383
458
+
Phe
GAA
[ENA]
¢þ
>WENV170694498
LGVD01073486
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
326
251
-
Phe
GAA
[ENA]
¢þ
>WENV170696991
LGVF01070462
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
940
865
-
Phe
GAA
[ENA]
¢þ
>W141491766
JGCJ01000140
Bacillota
Geobacillus sp. FW23 [JGCJ]
1411
1336
-
Phe
GAA
[ENA]
¡û
>W141491786
JGCJ01000154
Bacillota
Geobacillus sp. FW23 [JGCJ]
824
749
-
Phe
GAA
[ENA]
¡û
>C181106532
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
911241
911316
+
Phe
GAA
-
¡û
>C181106543
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
1098435
1098508
+
Phe
GAA
-
¡û
>C181106561
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
3843905
3843830
-
Phe
GAA
-
¡û
>C181106579
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
2214102
2214027
-
Phe
GAA
-
¡û
>C181110829
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
910289
910364
+
Phe
GAA
-
¡û
>C181110840
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
1097100
1097173
+
Phe
GAA
-
¡û
>C181110858
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
3836856
3836781
-
Phe
GAA
-
¡û
>C181110876
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
2210093
2210018
-
Phe
GAA
-
¡û
>C191029832
CP025074
Bacillota
[Bacillus] caldolyticus NEB414 [CP025074]
2626502
2626577
+
Phe
GAA
-
¡û
>C191029882
CP025074
Bacillota
[Bacillus] caldolyticus NEB414 [CP025074]
1448468
1448393
-
Phe
GAA
-
¡û
>W09135286
ACVM01000065
Bacillota
Geobacillus sp. Y4.1MC1 [ACVM]
5285
5210
-
Phe
GAA
[ENA]
¡û
>W09135301
ACVM01000076
Bacillota
Geobacillus sp. Y4.1MC1 [ACVM]
741
816
+
Phe
GAA
[ENA]
¡û
>W1910129758
BHZK01000001
Bacillota
Parageobacillus thermoglucosidasius TG4 [BHZK]
482838
482913
+
Phe
GAA
[ENA]
¡û
>W1910129819
BHZK01000001
Bacillota
Parageobacillus thermoglucosidasius TG4 [BHZK]
3054567
3054492
-
Phe
GAA
[ENA]
¡û
>W1910891434
NEWK01000001
Bacillota
Geobacillus thermocatenulatus BGSC 93A1 [NEWK]
3330
3255
-
Phe
GAA
[ENA]
¡û
>W1910891482
NEWK01000002
Bacillota
Geobacillus thermocatenulatus BGSC 93A1 [NEWK]
1337757
1337682
-
Phe
GAA
[ENA]
¡û
>W1810143676
PIJH01000001
Bacillota
Geobacillus thermodenitrificans JSC_T9a [PIJH]
733282
733207
-
Phe
GAA
[ENA]
¡û
>W1810192112
PKLB01000004
Bacillota
Bacillus sp. UMB0893 [PKLB]
36602
36675
+
Phe
GAA
[ENA]
¡û
>W1810756355
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1499833
1499758
-
Phe
GAA
[ENA]
¡û
>W1810756394
QPFA01000016
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
157
82
-
Phe
GAA
[ENA]
¡û
>C151040570
CP008934
Bacillota
Geobacillus stearothermophilus 10 [CP008934]
2323900
2323975
+
Phe
GAA
-
¡û
>C151040610
CP008934
Bacillota
Geobacillus stearothermophilus 10 [CP008934]
1166562
1166487
-
Phe
GAA
-
¡û
>C151046378
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
140781
140856
+
Phe
GAA
[Ensembl]
¡û
>C151046431
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6596148
6596073
-
Phe
GAA
[Ensembl]
¡û
>C151047517
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
138141
138216
+
Phe
GAA
[Ensembl]
¡û
>C151047570
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
7400619
7400544
-
Phe
GAA
[Ensembl]
¡û
>C151047690
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
136405
136480
+
Phe
GAA
[Ensembl]
¡û
>C151047744
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
6722470
6722395
-
Phe
GAA
[Ensembl]
¡û
>C151047777
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
136617
136692
+
Phe
GAA
[Ensembl]
¡û
>C151047830
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
6311653
6311578
-
Phe
GAA
[Ensembl]
¡û
>C151047861
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
136592
136667
+
Phe
GAA
[Ensembl]
¡û
>C151047915
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
6063977
6063902
-
Phe
GAA
[Ensembl]
¡û
>C151047946
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
137743
137818
+
Phe
GAA
[Ensembl]
¡û
>C151047999
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
7155329
7155254
-
Phe
GAA
[Ensembl]
¡û
>C151089629
CP012024
Bacillota
Bacillus smithii DSM 4216 [CP012024]
744475
744550
+
Phe
GAA
[Ensembl]
¡û
>C151089674
CP012024
Bacillota
Bacillus smithii DSM 4216 [CP012024]
2636980
2636905
-
Phe
GAA
[Ensembl]
¡û
>C151091831
CP012152
Bacillota
Anoxybacillus gonensis G2 [CP012152]
381252
381327
+
Phe
GAA
-
¡û
>C151091845
CP012152
Bacillota
Anoxybacillus gonensis G2 [CP012152]
2782974
2782901
-
Phe
GAA
-
¡û
>C151091850
CP012152
Bacillota
Anoxybacillus gonensis G2 [CP012152]
2374189
2374114
-
Phe
GAA
-
¡û
>W1510562417
CTED01000546
Bacillota
Paenibacillus ihuae GD6 [CTED]
13537
13462
-
Phe
GAA
[ENA]
¡û
>W1510562432
CTED01000582
Bacillota
Paenibacillus ihuae GD6 [CTED]
8720
8645
-
Phe
GAA
[ENA]
¡û
>C11109641
CP002442
Bacillota
Geobacillus sp. Y412MC52 [CP002442]
533850
533925
+
Phe
GAA
[Ensembl]
¡û
>C11109672
CP002442
Bacillota
Geobacillus sp. Y412MC52 [CP002442]
3054195
3054120
-
Phe
GAA
[Ensembl]
¡û
>C11109724
CP002293
Bacillota
Geobacillus sp. Y4.1MC1 [CP002293]
659040
659115
+
Phe
GAA
[Ensembl]
¡û
>C11109770
CP002293
Bacillota
Geobacillus sp. Y4.1MC1 [CP002293]
3267046
3266971
-
Phe
GAA
[Ensembl]
¡û
>W1510740937
CYGZ01000005
Bacillota
Anoxybacillus suryakundensis DSM 27374 [CYGZ]
152063
151990
-
Phe
GAA
[ENA]
¡û
>W1510740984
CYGZ01000033
Bacillota
Anoxybacillus suryakundensis DSM 27374 [CYGZ]
5780
5705
-
Phe
GAA
[ENA]
¡û
>W1511511705
JXTH01000005
Bacillota
Anoxybacillus thermarum AF/04 [JXTH]
30945
31018
+
Phe
GAA
[ENA]
¡û
>W1511511759
JXTH01000094
Bacillota
Anoxybacillus thermarum AF/04 [JXTH]
5186
5111
-
Phe
GAA
[ENA]
¡û
>W1511511772
JXTH01000111
Bacillota
Anoxybacillus thermarum AF/04 [JXTH]
535
460
-
Phe
GAA
[ENA]
¡û
>W121000690
ACWF01000017
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
2040
2115
+
Phe
GAA
[ENA]
¡û
>W121000707
ACWF01000051
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
22373
22298
-
Phe
GAA
[ENA]
¡û
>W121003634
AFEU01000001
Bacillota
Bacillus methanolicus PB1 [AFEU]
792675
792600
-
Phe
GAA
[ENA]
¡û
>W121003650
AFEU01000002
Bacillota
Bacillus methanolicus PB1 [AFEU]
421702
421774
+
Phe
GAA
[ENA]
¡û
>W121003691
AFEU01000004
Bacillota
Bacillus methanolicus PB1 [AFEU]
597
522
-
Phe
GAA
[ENA]
¡û
>W121111762
ALJT01000005
Bacillota
Anoxybacillus ayderensis G10 [ALJT]
30532
30605
+
Phe
GAA
[ENA]
¡û
>W1610078067
BDAQ01000008
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
135392
135317
-
Phe
GAA
[ENA]
¡û
>W1610078095
BDAQ01000021
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
2083
2158
+
Phe
GAA
[ENA]
¡û
>W1610869086
LQYU01000035
Bacillota
Anoxybacillus flavithermus [LQYU]
60996
60921
-
Phe
GAA
[ENA]
¡û
>W1610871069
LRAC01000008
Bacillota
Paenibacillus sp. DMB5 [LRAC]
484
409
-
Phe
GAA
[ENA]
¡û
>W1610871095
LRAC01000015
Bacillota
Paenibacillus sp. DMB5 [LRAC]
632
707
+
Phe
GAA
[ENA]
¡û
>W1610871136
LRAC01000127
Bacillota
Paenibacillus sp. DMB5 [LRAC]
161
236
+
Phe
GAA
[ENA]
¡û
>W1710076626
BDAQ01000008
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
135392
135317
-
Phe
GAA
[ENA]
¡û
>W1710076654
BDAQ01000021
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
2083
2158
+
Phe
GAA
[ENA]
¡û
>W1710518275
FNDX01000044
Bacillota
Paenibacillus typhae [FNDX]
50305
50230
-
Phe
GAA
[ENA]
¡û
>W1710518298
FNDX01000048
Bacillota
Paenibacillus typhae [FNDX]
653
728
+
Phe
GAA
[ENA]
¡û
>W1710554410
FOIK01000004
Bacillota
Paenibacillus sp. NFR01 [FOIK]
423955
423880
-
Phe
GAA
[ENA]
¡û
>W1710554426
FOIK01000005
Bacillota
Paenibacillus sp. NFR01 [FOIK]
889
964
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK