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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257034 (5 seq.)
>WENV180247626
OBEQ010046490
[OBEQ] groundwater metagenome; groundwater
477
403
-
Arg
TCG
[ENA]
¢þ
>WENV180249208
OBEQ010177965
[OBEQ] groundwater metagenome; groundwater
761
687
-
Arg
TCG
[ENA]
¢þ
>WENV180257725
OBEQ010936466
[OBEQ] groundwater metagenome; groundwater
482
556
+
Arg
TCG
[ENA]
¢þ
>WENV181144648
OEHO01054734
[OEHO] metagenome; unknown
209
135
-
Arg
TCG
[ENA]
¢þ
>WENV183689343
ORMF011425059
[ORMF] groundwater metagenome; groundwater
362
436
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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