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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257192 (63 seq.)
>W1710803022
LJYG01000090
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
59654
59579
-
Lys
CTT
[ENA]
¡û
>W1710855005
LLXY01000205
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
15892
15967
+
Lys
CTT
[ENA]
¡û
>W1710855061
LLXZ01000152
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
35188
35263
+
Lys
CTT
[ENA]
¡û
>W1710877742
LMQJ01000012
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
385546
385621
+
Lys
CTT
[ENA]
¡û
>W1711073421
LSIN01000131
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
110847
110772
-
Lys
CTT
[ENA]
¡û
>W1711075410
LSKJ01000780
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
3767
3842
+
Lys
CTT
[ENA]
¡û
>W1711138888
LVEM01000003
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
569332
569257
-
Lys
CTT
[ENA]
¡û
>W1711506017
MKWA01000015
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
102665
102740
+
Lys
CTT
[ENA]
¡û
>W1711928293
NAEX01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
52970
52895
-
Lys
CTT
[ENA]
¡û
>W1711928426
NAFA01000190
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
163316
163391
+
Lys
CTT
[ENA]
¡û
>W1711928642
NAFE01000225
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
8337
8262
-
Lys
CTT
[ENA]
¡û
>W1711928815
NAFI01000175
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
8085
8010
-
Lys
CTT
[ENA]
¡û
>W131164966
ARBF01000041
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
4785
4860
+
Lys
CTT
[ENA]
¡û
>W131170214
ARFJ01000001
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
14187
14112
-
Lys
CTT
[ENA]
¡û
>w022247
AAWJ01000001
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [AAWJ]
2892163
2892238
+
Lys
CTT
[ENA]
¡û
>W141043064
AMFB01000034
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
99878
99803
-
Lys
CTT
[ENA]
¡û
>W141063646
APJD01000006
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
432255
432330
+
Lys
CTT
[ENA]
¡û
>W141063710
APJE01000011
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
114745
114820
+
Lys
CTT
[ENA]
¡û
>WENV180690926
OCZS010037097
[OCZS] soil metagenome; soil
763
838
+
Lys
CTT
[ENA]
¢þ
>WENV181222790
OFDC01000276
[OFDC] hot springs metagenome; Water
20435
20510
+
Lys
CTT
[ENA]
¢þ
>WENV181226920
OFDN01000409
[OFDN] hot springs metagenome; Water
24314
24239
-
Lys
CTT
[ENA]
¢þ
>W141151055
AXAT01000153
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
14519
14594
+
Lys
CTT
[ENA]
¡û
>W141151117
AXAU01000041
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
14699
14624
-
Lys
CTT
[ENA]
¡û
>W141151177
AXAW01000003
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
63013
62938
-
Lys
CTT
[ENA]
¡û
>W141243604
CAJQ02000023
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
251546
251471
-
Lys
CTT
[ENA]
¡û
>WENV170002568
AGTN01070424
[AGTN] bioreactor metagenome; poplar biomass
754
829
+
Lys
CTT
[ENA]
¢þ
>WENV170712712
LNFM01016910
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3548
3473
-
Lys
CTT
[ENA]
¢þ
>WENV170712996
LNFM01022082
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10383
10458
+
Lys
CTT
[ENA]
¢þ
>WENV170964121
MRWG01003362
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
6
81
+
Lys
CTT
[ENA]
¢þ
>WENV170964324
MRWG01008132
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
6
81
+
Lys
CTT
[ENA]
¢þ
>WENV170974327
MTKY01057834
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2203
2128
-
Lys
CTT
[ENA]
¢þ
>C181113192
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
7081816
7081741
-
Lys
CTT
-
¡û
>C181203847
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
2586405
2586480
+
Lys
CTT
-
¡û
>C191019705
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
4965441
4965366
-
Lys
CTT
-
¡û
>C191071665
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
2289555
2289630
+
Lys
CTT
-
¡û
>C191186657
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
4180180
4180105
-
Lys
CTT
-
¡û
>W09104399
AALQ01000013
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
23138
23213
+
Lys
CTT
[ENA]
¡û
>W09107571
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
441723
441798
+
Lys
CTT
[ENA]
¡û
>W1910598257
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
6892353
6892278
-
Lys
CTT
[ENA]
¡û
>W1910840278
MZXW01000024
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
11673
11598
-
Lys
CTT
[ENA]
¡û
>W1911705992
QORW01000002
Alphaproteobacteria
Dongia deserti SYSU D60009 [QORW]
143971
143896
-
Lys
CTT
[ENA]
¡û
>W1810400219
PYFX01000012
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
112504
112429
-
Lys
CTT
[ENA]
¡û
>W1511706020
LGTB01000060
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
36904
36979
+
Lys
CTT
[ENA]
¡û
>C161017403
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
5699852
5699777
-
Lys
CTT
[Ensembl]
¡û
>W121065194
AJPV01000131
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
10940
11015
+
Lys
CTT
[ENA]
¡û
>W121065461
AJQA01000360
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
18095
18170
+
Lys
CTT
[ENA]
¡û
>W121065502
AJQB01000541
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
27479
27404
-
Lys
CTT
[ENA]
¡û
>W121065563
AJQD01000008
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
10293
10368
+
Lys
CTT
[ENA]
¡û
>W121065700
AJQF01000515
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
2030
2105
+
Lys
CTT
[ENA]
¡û
>W121065838
AJQI01000412
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
16650
16575
-
Lys
CTT
[ENA]
¡û
>W121065908
AJQK01000153
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
5880
5955
+
Lys
CTT
[ENA]
¡û
>W121065957
AJQL01000199
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
2014
2089
+
Lys
CTT
[ENA]
¡û
>W1610666879
LJYG01000090
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
59654
59579
-
Lys
CTT
[ENA]
¡û
>W1610717346
LLXY01000205
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
15892
15967
+
Lys
CTT
[ENA]
¡û
>W1610717402
LLXZ01000152
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
35188
35263
+
Lys
CTT
[ENA]
¡û
>W1610740088
LMQJ01000012
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
385546
385621
+
Lys
CTT
[ENA]
¡û
>W1610912726
LSIN01000131
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
110847
110772
-
Lys
CTT
[ENA]
¡û
>W1610914715
LSKJ01000780
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
3767
3842
+
Lys
CTT
[ENA]
¡û
>W1610949896
LVEM01000003
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
569332
569257
-
Lys
CTT
[ENA]
¡û
>W1710516741
FNCU01000001
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
398752
398677
-
Lys
CTT
[ENA]
¡û
>W1710564259
FOQJ01000002
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
667467
667542
+
Lys
CTT
[ENA]
¡û
>W1710578506
FPBQ01000002
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
126879
126804
-
Lys
CTT
[ENA]
¡û
>W1710600375
FUWJ01000011
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
98029
98104
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK