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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25720 (67 seq.)
>W1710871129
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2297056
2297145
+
Ser
CGA
[ENA]
¡û
>W1711089887
LTAB01000009
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1711250030
LYMJ01000009
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1711386338
MEFF01000039
Alphaproteobacteria
Sphingobium sp. SCN 64-10 [MEFF]
469
380
-
Ser
CGA
[ENA]
¡û
>W1711421967
MIAI01000264
Alphaproteobacteria
Sphingomonadales bacterium GWF1_63_6 [MIAI]
11869
11958
+
Ser
CGA
[ENA]
¡û
>W1712076977
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
3123018
3123107
+
Ser
CGA
[ENA]
¡û
>W1712084229
NHRH01000138
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
6371
6460
+
Ser
CGA
[ENA]
¡û
>C171019716
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
2150214
2150125
-
Ser
CGA
-
¡û
>C171049869
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
1628643
1628732
+
Ser
CGA
-
¡û
>C171108867
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
2074601
2074690
+
Ser
CGA
-
¡û
>W131196344
ASTG01000007
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
147915
148004
+
Ser
CGA
[ENA]
¡û
>W131224726
AUDA01000115
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
10918
10829
-
Ser
CGA
[ENA]
¡û
>W131224737
AUDA01000160
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
87259
87170
-
Ser
CGA
[ENA]
¡û
>W131224743
AUDA01000200
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
90
1
-
Ser
CGA
[ENA]
¡û
>W131241109
BARE01000006
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
187101
187190
+
Ser
CGA
[ENA]
¡û
>W131251326
CAVK010000250
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
52132
52221
+
Ser
CGA
[ENA]
¡û
>WENV180396586
OBPV01025582
[OBPV] marine metagenome; ENVO:00002010
60
149
+
Ser
CGA
[ENA]
¢þ
>W141078466
ATIB01000071
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
77527
77438
-
Ser
CGA
[ENA]
¡û
>W141231027
BATN01000040
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
30022
30111
+
Ser
CGA
[ENA]
¡û
>W141237815
BBJS01000007
Alphaproteobacteria
Sphingomonas paucimobilis NBRC 13935 [BBJS]
126899
126988
+
Ser
CGA
[ENA]
¡û
>W141285101
JANF02000073
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
3368
3457
+
Ser
CGA
[ENA]
¡û
>WENV183746591
POYE01030372
[POYE] biofilm metagenome; steel pipe from biofilm reactor
91
2
-
Ser
CGA
[ENA]
¢þ
>WENV170137006
CENV01132862
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
399
488
+
Ser
CGA
[ENA]
¢þ
>W141400533
JDRU02000215
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
3297
3386
+
Ser
CGA
[ENA]
¡û
>W141426719
JEMV01000006
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
79850
79939
+
Ser
CGA
[ENA]
¡û
>W141462307
JFHR01000024
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
44326
44415
+
Ser
CGA
[ENA]
¡û
>W141484887
JFYY01000010
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
7273
7362
+
Ser
CGA
[ENA]
¡û
>W141484990
JFZA02000014
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
53284
53195
-
Ser
CGA
[ENA]
¡û
>C181072090
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
1454638
1454727
+
Ser
CGA
-
¡û
>C191146360
CP035765
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [CP035765]
1677717
1677628
-
Ser
CGA
-
¡û
>C191185544
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
3716717
3716806
+
Ser
CGA
-
¡û
>W141726148
JNAC01000067
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
48769
48680
-
Ser
CGA
[ENA]
¡û
>W141808050
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
1336026
1335937
-
Ser
CGA
[ENA]
¡û
>W1910006983
BBQY01000001
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
361707
361796
+
Ser
CGA
[ENA]
¡û
>W1910649304
LXYF01000052
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
96268
96179
-
Ser
CGA
[ENA]
¡û
>W1910744283
MIAK01000001
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
10031
10120
+
Ser
CGA
[ENA]
¡û
>W1911075023
NMUA01000051
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
12041
12130
+
Ser
CGA
[ENA]
¡û
>W1911494771
OBMI01000002
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
577197
577108
-
Ser
CGA
[ENA]
¡û
>W1911495411
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
2316883
2316794
-
Ser
CGA
[ENA]
¡û
>W1911688335
QLJL01000001
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
143575
143664
+
Ser
CGA
[ENA]
¡û
>W1911746110
QVRA01000032
Alphaproteobacteria
Sphingobium terrigena EO9 [QVRA]
14085
13996
-
Ser
CGA
[ENA]
¡û
>W1810000449
BEWI01000030
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
114462
114373
-
Ser
CGA
[ENA]
¡û
>W1810400854
PYGL01000001
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
205751
205662
-
Ser
CGA
[ENA]
¡û
>W1810724701
QOBC01000001
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [QOBC]
52483
52394
-
Ser
CGA
[ENA]
¡û
>C151074546
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
2638947
2639036
+
Ser
CGA
[Ensembl]
¡û
>W10126767
AEDK01000002
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
171697
171786
+
Ser
CGA
[ENA]
¡û
>C10111656
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
699358
699447
+
Ser
CGA
[Ensembl]
¡û
>W1510757087
JACV01000035
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
190463
190552
+
Ser
CGA
[ENA]
¡û
>C11119787
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
2630987
2631076
+
Ser
CGA
[Ensembl]
¡û
>W11134028
AEDK01000002
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
171697
171786
+
Ser
CGA
[ENA]
¡û
>W1511640342
LDUA01000007
Alphaproteobacteria
Sphingomonas paucimobilis LCT-SP1 [LDUA]
21151
21062
-
Ser
CGA
[ENA]
¡û
>W1511646458
LECE01000023
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
21237
21148
-
Ser
CGA
[ENA]
¡û
>W11161375
AFGG01000010
Alphaproteobacteria
Sphingomonas sp. S17 [AFGG]
126953
127042
+
Ser
CGA
[ENA]
¡û
>C161003342
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
779925
780014
+
Ser
CGA
[Ensembl]
¡û
>C161054566
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
970017
969928
-
Ser
CGA
[Ensembl]
¡û
>C161092717
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
1720455
1720544
+
Ser
CGA
[Ensembl]
¡û
>W121084316
AKIB01000014
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
20437
20348
-
Ser
CGA
[ENA]
¡û
>W1610076915
BCZC01000193
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
3312
3401
+
Ser
CGA
[ENA]
¡û
>W1610076966
BCZD01000029
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
3379
3468
+
Ser
CGA
[ENA]
¡û
>W121071168
AJXQ01000142
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
27572
27661
+
Ser
CGA
[ENA]
¡û
>W1610609157
LFVX01000015
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
12818
12907
+
Ser
CGA
[ENA]
¡û
>W1610733475
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2297056
2297145
+
Ser
CGA
[ENA]
¡û
>W1610924231
LTAB01000009
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1611016912
LYMJ01000009
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
82189
82100
-
Ser
CGA
[ENA]
¡û
>W1710074604
BCZC01000193
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
3312
3401
+
Ser
CGA
[ENA]
¡û
>W1710074655
BCZD01000029
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
3379
3468
+
Ser
CGA
[ENA]
¡û
>W1710730444
LFVX01000015
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
12818
12907
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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