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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25725 (27 seq.)
>WENV180101863
OAOW01036718
[OAOW] marine metagenome; ENVO.00002110
261
172
-
Ser
TGA
[ENA]
¢þ
>W141227829
BALM01000002
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
188090
188179
+
Ser
TGA
[ENA]
¡û
>W141227830
BALM01000002
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
188910
188999
+
Ser
TGA
[ENA]
¡û
>W141227831
BALM01000002
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
194280
194369
+
Ser
TGA
[ENA]
¡û
>W141227832
BALM01000002
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
195970
196059
+
Ser
TGA
[ENA]
¡û
>W141227868
BALM01000048
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
1748
1659
-
Ser
TGA
[ENA]
¡û
>W141227869
BALM01000049
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
1998
2087
+
Ser
TGA
[ENA]
¡û
>C191155885
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
1879702
1879791
+
Ser
TGA
-
¡û
>C191155933
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2039483
2039394
-
Ser
TGA
-
¡û
>C191155934
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2038102
2038013
-
Ser
TGA
-
¡û
>C191155935
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2037723
2037634
-
Ser
TGA
-
¡û
>C191155988
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2575571
2575660
+
Ser
TGA
-
¡û
>C191155989
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2612440
2612529
+
Ser
TGA
-
¡û
>C191155990
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2628352
2628441
+
Ser
TGA
-
¡û
>C191156028
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
3195991
3195902
-
Ser
TGA
-
¡û
>W1911581933
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
186406
186495
+
Ser
TGA
[ENA]
¡û
>W1911581934
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
189718
189807
+
Ser
TGA
[ENA]
¡û
>W1911581935
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
190292
190381
+
Ser
TGA
[ENA]
¡û
>W1911581948
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
429046
428957
-
Ser
TGA
[ENA]
¡û
>W1911809440
QYYH01000006
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
65555
65466
-
Ser
TGA
[ENA]
¡û
>W1911809441
QYYH01000006
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
49643
49554
-
Ser
TGA
[ENA]
¡û
>W1911809506
QYYH01000130
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
3658
3747
+
Ser
TGA
[ENA]
¡û
>W1911809513
QYYH01000240
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
540
629
+
Ser
TGA
[ENA]
¡û
>W1911812346
QZEI01000051
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
1834
1923
+
Ser
TGA
[ENA]
¡û
>W1911812347
QZEI01000051
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
2208
2297
+
Ser
TGA
[ENA]
¡û
>W1911812358
QZEI01000070
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
1212
1301
+
Ser
TGA
[ENA]
¡û
>W1911812370
QZEI01000145
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
3829
3918
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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