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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258376 (17 seq.)
>A171002945
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
610207
610280
+
Gln
TTG
-
¡û
>A171002958
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
796245
796172
-
Gln
CTG
-
¡û
>A176000098
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1015560
1015659
+
Gln
TTG
-
¡û
>A17A000748
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1015560
1015659
+
Gln
TTG
-
¡û
>A173000276
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1598447
1598535
+
Gln
CTG
-
¡û
>A173000346
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1213773
1213683
-
Gln
CTG
-
¡û
>WENV180014069
FPIC01042203
[FPIC] soil metagenome; Soil
77
4
-
Gln
CTG
[ENA]
¢þ
>At0197
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1416282
1416357
+
Gln
TTG
[Ensembl]
¡û
>At0229
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1797917
1797828
-
Gln
CTG
[Ensembl]
¡û
>At0242
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1155444
1155516
+
Gln
CTG
[Ensembl]
¡û
>At0262
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1346043
1345971
-
Gln
TTG
[Ensembl]
¡û
>At0302
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1598752
1598876
+
Gln
TTG
[Ensembl]
¡û
>At0310
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
320574
320451
-
Gln
CTG
[Ensembl]
¡û
>At0354
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
411327
411216
-
Gln
TTG
[Ensembl]
¡û
>At0373
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1704246
1704135
-
Gln
CTG
[Ensembl]
¡û
>WENV170574085
FLYM01004469
[FLYM] hot springs metagenome; Sediment
27019
27094
+
Gln
TTG
[ENA]
¢þ
>W1911075145
NMUF01000022
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
6075
6150
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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