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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258685 (75 seq.)
>W131144777
AQFR01000013
Bacillota
Lactobacillus intestinalis ASF360 [AQFR]
2215
2290
+
Thr
CGT
[ENA]
¡û
>W1711092320
LTDX01000022
Bacillota
Lactobacillus acetotolerans [LTDX]
1041
967
-
Thr
CGT
[ENA]
¡û
>W1711372488
MDTN01000010
Bacillota
Lactobacillus jensenii [MDTN]
16164
16092
-
Thr
CGT
[ENA]
¡û
>C171084505
CP018809
Bacillota
Lactobacillus jensenii SNUV360 [CP018809]
1507343
1507415
+
Thr
CGT
-
¡û
>W131226406
AUEI01000009
Bacillota
Lactobacillus psittaci DSM 15354 [AUEI]
6833
6761
-
Thr
CGT
[ENA]
¡û
>WENV180810539
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
5149
5077
-
Thr
CGT
[ENA]
¢þ
>WENV180822778
ODJV01001297
[ODJV] human metagenome; G_DNA_Posterior fornix
692
764
+
Thr
CGT
[ENA]
¢þ
>WENV180845137
ODKS01000017
[ODKS] human metagenome; G_DNA_Posterior fornix
204
132
-
Thr
CGT
[ENA]
¢þ
>WENV180887069
ODMF01000016
[ODMF] human metagenome; G_DNA_Posterior fornix
51339
51411
+
Thr
CGT
[ENA]
¢þ
>WENV180912564
ODSK01000011
[ODSK] human metagenome; G_DNA_Posterior fornix
44892
44964
+
Thr
CGT
[ENA]
¢þ
>WENV180914356
ODSW01000062
[ODSW] human metagenome; G_DNA_Posterior fornix
13380
13452
+
Thr
CGT
[ENA]
¢þ
>W141094711
AVCU01000060
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
5576
5504
-
Thr
CGT
[ENA]
¡û
>WENV181131326
OEGB01000023
[OEGB] human metagenome; G_DNA_Posterior fornix
42144
42216
+
Thr
CGT
[ENA]
¢þ
>WENV181262485
OFFY01006185
[OFFY] mouse gut metagenome; faeces
1137
1064
-
Thr
CGT
[ENA]
¢þ
>WENV181282199
OFGP01003830
[OFGP] mouse gut metagenome; faeces
4961
5034
+
Thr
CGT
[ENA]
¢þ
>WENV181286918
OFGX01000153
[OFGX] mouse gut metagenome; faeces
1946
2019
+
Thr
CGT
[ENA]
¢þ
>WENV181289467
OFHA01000134
[OFHA] mouse gut metagenome; faeces
63673
63600
-
Thr
CGT
[ENA]
¢þ
>WENV181599200
OGLB01046664
[OGLB] metagenome; Human gut stool
164
237
+
Thr
CGT
[ENA]
¢þ
>W141228431
BALY01000001
Bacillota
Lactobacillus hamsteri JCM 6256 [BALY]
19355
19428
+
Thr
CGT
[ENA]
¡û
>WENV183150114
OLOP01000088
[OLOP] human gut metagenome; faeces
39847
39775
-
Thr
CGT
[ENA]
¢þ
>WENV183182457
OLPK01000285
[OLPK] human gut metagenome; faeces
36722
36649
-
Thr
CGT
[ENA]
¢þ
>WENV183188775
OLPP01029481
[OLPP] human gut metagenome; faeces
166
239
+
Thr
CGT
[ENA]
¢þ
>WENV183263634
OLRR01000807
[OLRR] human gut metagenome; faeces
9713
9786
+
Thr
CGT
[ENA]
¢þ
>WENV183548294
OOAW01003714
[OOAW] human gut metagenome; human gut
1485
1412
-
Thr
CGT
[ENA]
¢þ
>WENV183605851
OODN01000062
[OODN] human gut metagenome; human gut
30134
30207
+
Thr
CGT
[ENA]
¢þ
>C181012352
CP012389
Bacillota
Lactobacillus amylovorus JBD401 [CP012389]
387323
387396
+
Thr
CGT
-
¡û
>C181027641
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
1566600
1566673
+
Thr
CGT
-
¡û
>W09110896
ABWG01000005
Bacillota
Lactobacillus jensenii 1153 [ABWG]
136012
136084
+
Thr
CGT
[ENA]
¡û
>W09122985
ACGQ01000020
Bacillota
Lactobacillus jensenii JV-V16 [ACGQ]
42835
42907
+
Thr
CGT
[ENA]
¡û
>W09133319
ACOY01000032
Bacillota
Lactobacillus jensenii 269-3 [ACOY]
5055
4983
-
Thr
CGT
[ENA]
¡û
>W1911597862
PNRB01000001
Bacillota
Lactobacillus amylovorus PMRA1 [PNRB]
136118
136046
-
Thr
CGT
[ENA]
¡û
>W1810190560
PKJY01000004
Bacillota
Lactobacillus jensenii UMB0077 [PKJY]
5143
5071
-
Thr
CGT
[ENA]
¡û
>W1810190618
PKJZ01000006
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
5305
5233
-
Thr
CGT
[ENA]
¡û
>W1810815318
QSAX01000022
Bacillota
Lactobacillus amylovorus AF08-3 [QSAX]
31537
31610
+
Thr
CGT
[ENA]
¡û
>C151003280
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
1387793
1387719
-
Thr
CGT
[Ensembl]
¡û
>W10101963
ACOF01000045
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
42754
42826
+
Thr
CGT
[ENA]
¡û
>W10103237
ACQD01000058
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
51242
51314
+
Thr
CGT
[ENA]
¡û
>W10103508
ACQN01000036
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
1738
1666
-
Thr
CGT
[ENA]
¡û
>W10112233
ADEX01000047
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
50736
50808
+
Thr
CGT
[ENA]
¡û
>W10112237
ADEX01000067
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
16400
16472
+
Thr
CGT
[ENA]
¡û
>W1510072894
CDLD01000009
Bacillota
Lactobacillus sp. OTU4228 sp. [CDLD]
26637
26712
+
Thr
CGT
[ENA]
¡û
>W11102119
ACOF01000045
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
42754
42826
+
Thr
CGT
[ENA]
¡û
>W11103393
ACQD01000058
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
51242
51314
+
Thr
CGT
[ENA]
¡û
>W11103664
ACQN01000036
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
1738
1666
-
Thr
CGT
[ENA]
¡û
>C11111941
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
507688
507761
+
Thr
CGT
[Ensembl]
¡û
>C11112036
CP002609
Bacillota
Lactobacillus amylovorus GRL1118 [CP002609]
463333
463408
+
Thr
CGT
[Ensembl]
¡û
>C11112095
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
509304
509377
+
Thr
CGT
[Ensembl]
¡û
>W11115454
ADEX01000047
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
50736
50808
+
Thr
CGT
[ENA]
¡û
>W11115458
ADEX01000067
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
16400
16472
+
Thr
CGT
[ENA]
¡û
>W1511580675
LARO01000028
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
2562
2637
+
Thr
CGT
[ENA]
¡û
>W1610031438
AYYU01000052
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
2230
2302
+
Thr
CGT
[ENA]
¡û
>W1610031787
AYZC01000037
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
12695
12621
-
Thr
CGT
[ENA]
¡û
>W1610032823
AZCM01000034
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
17336
17409
+
Thr
CGT
[ENA]
¡û
>W1610036145
AZFB01000019
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
2148
2220
+
Thr
CGT
[ENA]
¡û
>W1610037827
AZGI01000025
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
19402
19475
+
Thr
CGT
[ENA]
¡û
>W1610039466
AZNM01000004
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
2706
2778
+
Thr
CGT
[ENA]
¡û
>W1610039530
AZNN01000027
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
5134
5062
-
Thr
CGT
[ENA]
¡û
>W1610039565
AZNO01000005
Bacillota
Lactobacillus jensenii IM11 [AZNO]
16616
16688
+
Thr
CGT
[ENA]
¡û
>W1610039658
AZRC01000034
Bacillota
Lactobacillus jensenii IM59 [AZRC]
5075
5003
-
Thr
CGT
[ENA]
¡û
>W1610039684
AZRD01000013
Bacillota
Lactobacillus jensenii IM1 [AZRD]
42884
42956
+
Thr
CGT
[ENA]
¡û
>W1610039732
AZRE01000012
Bacillota
Lactobacillus jensenii IM3 [AZRE]
5033
4961
-
Thr
CGT
[ENA]
¡û
>W1610045739
BBBU01000038
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
3294
3368
+
Thr
CGT
[ENA]
¡û
>W1610926358
LTDX01000022
Bacillota
Lactobacillus acetotolerans [LTDX]
1041
967
-
Thr
CGT
[ENA]
¡û
>W1710028365
AYYU01000052
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
2230
2302
+
Thr
CGT
[ENA]
¡û
>W1710028714
AYZC01000037
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
12695
12621
-
Thr
CGT
[ENA]
¡û
>W1710030154
AZCM01000034
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
17336
17409
+
Thr
CGT
[ENA]
¡û
>W1710033184
AZFB01000019
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
2148
2220
+
Thr
CGT
[ENA]
¡û
>W1710034866
AZGI01000025
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
19402
19475
+
Thr
CGT
[ENA]
¡û
>W1710036611
AZNM01000004
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
2706
2778
+
Thr
CGT
[ENA]
¡û
>W1710036675
AZNN01000027
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
5134
5062
-
Thr
CGT
[ENA]
¡û
>W1710036710
AZNO01000005
Bacillota
Lactobacillus jensenii IM11 [AZNO]
16616
16688
+
Thr
CGT
[ENA]
¡û
>W1710036803
AZRC01000034
Bacillota
Lactobacillus jensenii IM59 [AZRC]
5075
5003
-
Thr
CGT
[ENA]
¡û
>W1710036829
AZRD01000013
Bacillota
Lactobacillus jensenii IM1 [AZRD]
42884
42956
+
Thr
CGT
[ENA]
¡û
>W1710036877
AZRE01000012
Bacillota
Lactobacillus jensenii IM3 [AZRE]
5033
4961
-
Thr
CGT
[ENA]
¡û
>W1710042580
BBBU01000038
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
3294
3368
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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