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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258851 (51 seq.)
>W1711228239
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
385109
385034
-
Gly
GCC
[ENA]
¡û
>W1711228240
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
384997
384922
-
Gly
GCC
[ENA]
¡û
>W1711228241
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
384891
384816
-
Gly
GCC
[ENA]
¡û
>W1711228280
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
108548
108623
+
Gly
GCC
[ENA]
¡û
>W1711228283
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
108931
109006
+
Gly
GCC
[ENA]
¡û
>W1711409434
MGOR01000380
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
1349
1274
-
Gly
GCC
[ENA]
¡û
>W1711409435
MGOR01000380
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
1219
1144
-
Gly
GCC
[ENA]
¡û
>WENV013374
AACY020368234
Marine microbial communities from Global Ocean Sampling (GOS)
1631
1706
+
Gly
GCC
[ENA]
>WENV013375
AACY020368234
Marine microbial communities from Global Ocean Sampling (GOS)
1763
1838
+
Gly
GCC
[ENA]
>WENV013376
AACY020368235
Marine microbial communities from Global Ocean Sampling (GOS)
99
174
+
Gly
GCC
[ENA]
>WENV180028916
FTJH01424311
[FTJH] metagenome; soil
390
465
+
Gly
GCC
[ENA]
¢þ
>WENV181414194
OGCL01000094
[OGCL] hot springs metagenome; Hot spring water
20508
20433
-
Gly
GCC
[ENA]
¢þ
>WENV181414230
OGCL01000129
[OGCL] hot springs metagenome; Hot spring water
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV181414365
OGCL01000280
[OGCL] hot springs metagenome; Hot spring water
57740
57815
+
Gly
GCC
[ENA]
¢þ
>WENV181414403
OGCL01000337
[OGCL] hot springs metagenome; Hot spring water
52714
52787
+
Gly
GCC
[ENA]
¢þ
>WENV181414490
OGCL01000474
[OGCL] hot springs metagenome; Hot spring water
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV181414643
OGCL01000906
[OGCL] hot springs metagenome; Hot spring water
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV181414800
OGCL01001445
[OGCL] hot springs metagenome; Hot spring water
20275
20200
-
Gly
GCC
[ENA]
¢þ
>WENV170574225
FLYM01015467
[FLYM] hot springs metagenome; Sediment
190
115
-
Gly
GCC
[ENA]
¢þ
>C191129063
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
725053
725128
+
Gly
GCC
-
¡û
>C191129064
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
725180
725255
+
Gly
GCC
-
¡û
>C191129072
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2222416
2222491
+
Gly
GCC
-
¡û
>C191129075
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2222800
2222875
+
Gly
GCC
-
¡û
>W141776818
JOMH01000001
Gammaproteobacteria
Polycyclovorans algicola TG408 [JOMH]
2107140
2107065
-
Gly
GCC
[ENA]
¡û
>W141779376
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
158029
157954
-
Gly
GCC
[ENA]
¡û
>W141779388
JONU01000006
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
78
3
-
Gly
GCC
[ENA]
¡û
>W141779390
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
79280
79355
+
Gly
GCC
[ENA]
¡û
>W141779393
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
79606
79681
+
Gly
GCC
[ENA]
¡û
>W1511573476
LAMX01000013
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
114773
114848
+
Gly
GCC
[ENA]
¡û
>W1511573495
LAMX01000028
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
9709
9634
-
Gly
GCC
[ENA]
¡û
>W1511573498
LAMX01000028
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
9326
9251
-
Gly
GCC
[ENA]
¡û
>W1511584696
LAVS01000025
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
25496
25421
-
Gly
GCC
[ENA]
¡û
>W1511584697
LAVS01000025
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
25371
25296
-
Gly
GCC
[ENA]
¡û
>W1511584700
LAVS01000026
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
20329
20254
-
Gly
GCC
[ENA]
¡û
>W1511584703
LAVS01000026
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
19946
19871
-
Gly
GCC
[ENA]
¡û
>W11162863
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
87764
87839
+
Gly
GCC
[ENA]
¡û
>W11162866
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
88149
88224
+
Gly
GCC
[ENA]
¡û
>W11162867
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
88270
88345
+
Gly
GCC
[ENA]
¡û
>W11162882
AFHI01000024
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
30279
30204
-
Gly
GCC
[ENA]
¡û
>W11162883
AFHI01000024
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
30148
30073
-
Gly
GCC
[ENA]
¡û
>W11162884
AFHI01000024
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
30022
29947
-
Gly
GCC
[ENA]
¡û
>C161058484
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2205703
2205778
+
Gly
GCC
-
¡û
>C161058485
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2205796
2205871
+
Gly
GCC
-
¡û
>C161058486
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2205898
2205973
+
Gly
GCC
-
¡û
>C161058528
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
3487453
3487378
-
Gly
GCC
-
¡û
>C161058531
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
3487114
3487039
-
Gly
GCC
-
¡û
>W1611012156
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
385109
385034
-
Gly
GCC
[ENA]
¡û
>W1611012157
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
384997
384922
-
Gly
GCC
[ENA]
¡û
>W1611012158
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
384891
384816
-
Gly
GCC
[ENA]
¡û
>W1611012197
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
108548
108623
+
Gly
GCC
[ENA]
¡û
>W1611012200
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
108931
109006
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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