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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258872 (119 seq.)
>W131104536
APCR01000306
Betaproteobacteria
Comamonas sp. B-9 [APCR]
16954
16879
-
Lys
CTT
[ENA]
¡û
>W131104537
APCR01000306
Betaproteobacteria
Comamonas sp. B-9 [APCR]
16811
16736
-
Lys
CTT
[ENA]
¡û
>w019689
AAUJ01000005
Betaproteobacteria
Comamonas testosteroni KF-1 [AAUJ]
341755
341683
-
Lys
CTT
[ENA]
¡û
>w019688
AAUJ01000005
Betaproteobacteria
Comamonas testosteroni KF-1 [AAUJ]
341880
341808
-
Lys
CTT
[ENA]
¡û
>w019687
AAUJ01000005
Betaproteobacteria
Comamonas testosteroni KF-1 [AAUJ]
342005
341933
-
Lys
CTT
[ENA]
¡û
>WENV181775951
OGRF01061301
[OGRF] human gut metagenome; faeces
86
161
+
Lys
CTT
[ENA]
¢þ
>W141237749
BBJR01000001
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
176351
176426
+
Lys
CTT
[ENA]
¡û
>WENV170001757
AGFS01145336
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
98
23
-
Lys
CTT
[ENA]
¢þ
>W1810072649
PEFL01000002
Betaproteobacteria
Comamonas sp. 26 [PEFL]
326909
326984
+
Lys
CTT
[ENA]
¡û
>W1810072650
PEFL01000002
Betaproteobacteria
Comamonas sp. 26 [PEFL]
327036
327111
+
Lys
CTT
[ENA]
¡û
>W1810072651
PEFL01000002
Betaproteobacteria
Comamonas sp. 26 [PEFL]
327163
327238
+
Lys
CTT
[ENA]
¡û
>W1810762887
QQAS01000002
Betaproteobacteria
Comamonas sp. AG1104 [QQAS]
487803
487728
-
Lys
CTT
[ENA]
¡û
>W1810762888
QQAS01000002
Betaproteobacteria
Comamonas sp. AG1104 [QQAS]
487678
487603
-
Lys
CTT
[ENA]
¡û
>W1810762889
QQAS01000002
Betaproteobacteria
Comamonas sp. AG1104 [QQAS]
487553
487478
-
Lys
CTT
[ENA]
¡û
>W1810889193
QURR01000002
Betaproteobacteria
Comamonas testosteroni SWCO2 [QURR]
258888
258813
-
Lys
CTT
[ENA]
¡û
>W1810889194
QURR01000002
Betaproteobacteria
Comamonas testosteroni SWCO2 [QURR]
258760
258685
-
Lys
CTT
[ENA]
¡û
>W1810889195
QURR01000002
Betaproteobacteria
Comamonas testosteroni SWCO2 [QURR]
258633
258558
-
Lys
CTT
[ENA]
¡û
>W1810889196
QURR01000002
Betaproteobacteria
Comamonas testosteroni SWCO2 [QURR]
258509
258434
-
Lys
CTT
[ENA]
¡û
>C151011123
CP006704
Betaproteobacteria
Comamonas testosteroni TK102 [CP006704]
1112587
1112512
-
Lys
CTT
[Ensembl]
¡û
>C151011124
CP006704
Betaproteobacteria
Comamonas testosteroni TK102 [CP006704]
1112462
1112387
-
Lys
CTT
[Ensembl]
¡û
>C151011125
CP006704
Betaproteobacteria
Comamonas testosteroni TK102 [CP006704]
1112337
1112262
-
Lys
CTT
[Ensembl]
¡û
>W1510015193
BBQP01000003
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
127413
127338
-
Lys
CTT
[ENA]
¡û
>W1510015194
BBQP01000003
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
127288
127213
-
Lys
CTT
[ENA]
¡û
>W1510015195
BBQP01000003
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
127163
127088
-
Lys
CTT
[ENA]
¡û
>W10119405
ADVQ01000061
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
72596
72671
+
Lys
CTT
[ENA]
¡û
>W10119406
ADVQ01000061
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
72721
72796
+
Lys
CTT
[ENA]
¡û
>C10300058
CP001220
Betaproteobacteria
Comamonas thiooxydans CNB-1 [CP001220]
1016820
1016745
-
Lys
CTT
[Ensembl]
¡û
>WENV11101829
AGFS01145336
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
98
23
-
Lys
CTT
[ENA]
¡û
>W1510741156
CYHD01000001
Betaproteobacteria
Comamonas thiooxydans DSM 17888 [CYHD]
496388
496313
-
Lys
CTT
[ENA]
¡û
>W1511204467
JMRS01000010
Betaproteobacteria
Comamonas testosteroni I2 [JMRS]
125032
124957
-
Lys
CTT
[ENA]
¡û
>W1511204468
JMRS01000010
Betaproteobacteria
Comamonas testosteroni I2 [JMRS]
124907
124832
-
Lys
CTT
[ENA]
¡û
>W1511248428
JNVD01000022
Betaproteobacteria
Comamonas testosteroni WDL7 [JNVD]
316517
316592
+
Lys
CTT
[ENA]
¡û
>W1511248429
JNVD01000022
Betaproteobacteria
Comamonas testosteroni WDL7 [JNVD]
316642
316717
+
Lys
CTT
[ENA]
¡û
>W1511248430
JNVD01000022
Betaproteobacteria
Comamonas testosteroni WDL7 [JNVD]
316767
316842
+
Lys
CTT
[ENA]
¡û
>W11125625
ADVQ01000061
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
72596
72671
+
Lys
CTT
[ENA]
¡û
>W11125626
ADVQ01000061
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
72721
72796
+
Lys
CTT
[ENA]
¡û
>W1511481670
JWJW01000025
Betaproteobacteria
Comamonas thiooxydans R17B [JWJW]
140
65
-
Lys
CTT
[ENA]
¡û
>W1511517014
JXWN01000127
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
4579
4654
+
Lys
CTT
[ENA]
¡û
>W1511584147
LAVC01000003
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
38890
38815
-
Lys
CTT
[ENA]
¡û
>W1511584148
LAVC01000003
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
38765
38690
-
Lys
CTT
[ENA]
¡û
>W1511584149
LAVC01000003
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
38640
38565
-
Lys
CTT
[ENA]
¡û
>C161107183
LN879547
Betaproteobacteria
Comamonas thiooxydans [LN879547]
478737
478662
-
Lys
CTT
-
¡û
>C161107184
LN879547
Betaproteobacteria
Comamonas thiooxydans [LN879547]
478612
478537
-
Lys
CTT
-
¡û
>C161107185
LN879547
Betaproteobacteria
Comamonas thiooxydans [LN879547]
478487
478412
-
Lys
CTT
-
¡û
>W121033124
AHIL01000029
Betaproteobacteria
Comamonas testosteroni ATCC 11996 [AHIL]
338967
339042
+
Lys
CTT
[ENA]
¡û
>W1610028404
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512442
512367
-
Lys
CTT
[ENA]
¡û
>W1610028405
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512315
512240
-
Lys
CTT
[ENA]
¡û
>W1610028406
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512190
512115
-
Lys
CTT
[ENA]
¡û
>W1610028407
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512065
511990
-
Lys
CTT
[ENA]
¡û
>W1610028408
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
511940
511865
-
Lys
CTT
[ENA]
¡û
>W1610028628
AWOU01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
75100
75025
-
Lys
CTT
[ENA]
¡û
>W1610028629
AWOU01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
74975
74900
-
Lys
CTT
[ENA]
¡û
>W1610028694
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
75350
75275
-
Lys
CTT
[ENA]
¡û
>W1610028695
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
75225
75150
-
Lys
CTT
[ENA]
¡û
>W1610028696
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
75100
75025
-
Lys
CTT
[ENA]
¡û
>W1610028697
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
74975
74900
-
Lys
CTT
[ENA]
¡û
>W1610028861
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75424
75349
-
Lys
CTT
[ENA]
¡û
>W1610028862
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75299
75224
-
Lys
CTT
[ENA]
¡û
>W1610028863
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75174
75099
-
Lys
CTT
[ENA]
¡û
>W1610028864
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75049
74974
-
Lys
CTT
[ENA]
¡û
>W1610028913
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188972
188897
-
Lys
CTT
[ENA]
¡û
>W1610028914
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188847
188772
-
Lys
CTT
[ENA]
¡û
>W1610028915
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188722
188647
-
Lys
CTT
[ENA]
¡û
>W1610028916
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188597
188522
-
Lys
CTT
[ENA]
¡û
>W1610028917
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188472
188397
-
Lys
CTT
[ENA]
¡û
>W1610028918
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188347
188272
-
Lys
CTT
[ENA]
¡û
>W1610028919
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188222
188147
-
Lys
CTT
[ENA]
¡û
>W1610028920
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188097
188022
-
Lys
CTT
[ENA]
¡û
>W1610028922
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187845
187770
-
Lys
CTT
[ENA]
¡û
>W1610028923
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187720
187645
-
Lys
CTT
[ENA]
¡û
>W1610028924
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187595
187520
-
Lys
CTT
[ENA]
¡û
>W1610028925
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187470
187395
-
Lys
CTT
[ENA]
¡û
>W1610028974
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
98095
98020
-
Lys
CTT
[ENA]
¡û
>W1610028975
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97970
97895
-
Lys
CTT
[ENA]
¡û
>W1610028976
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97845
97770
-
Lys
CTT
[ENA]
¡û
>W1610028977
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97720
97645
-
Lys
CTT
[ENA]
¡û
>W1610028978
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97595
97520
-
Lys
CTT
[ENA]
¡û
>W1610029088
AWTQ01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
75285
75210
-
Lys
CTT
[ENA]
¡û
>W1610029089
AWTQ01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
75160
75085
-
Lys
CTT
[ENA]
¡û
>W1610029090
AWTQ01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
75035
74960
-
Lys
CTT
[ENA]
¡û
>W1610631790
LIOM01000001
Betaproteobacteria
Comamonas thiooxydans [LIOM]
496388
496313
-
Lys
CTT
[ENA]
¡û
>W1710024306
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512442
512367
-
Lys
CTT
[ENA]
¡û
>W1710024307
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512315
512240
-
Lys
CTT
[ENA]
¡û
>W1710024308
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512190
512115
-
Lys
CTT
[ENA]
¡û
>W1710024309
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
512065
511990
-
Lys
CTT
[ENA]
¡û
>W1710024310
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
511940
511865
-
Lys
CTT
[ENA]
¡û
>W1710024530
AWOU01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
75100
75025
-
Lys
CTT
[ENA]
¡û
>W1710024531
AWOU01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
74975
74900
-
Lys
CTT
[ENA]
¡û
>W1710024596
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
75350
75275
-
Lys
CTT
[ENA]
¡û
>W1710024597
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
75225
75150
-
Lys
CTT
[ENA]
¡û
>W1710024598
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
75100
75025
-
Lys
CTT
[ENA]
¡û
>W1710024599
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
74975
74900
-
Lys
CTT
[ENA]
¡û
>W1710026231
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75424
75349
-
Lys
CTT
[ENA]
¡û
>W1710026232
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75299
75224
-
Lys
CTT
[ENA]
¡û
>W1710026233
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75174
75099
-
Lys
CTT
[ENA]
¡û
>W1710026234
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
75049
74974
-
Lys
CTT
[ENA]
¡û
>W1710026283
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188972
188897
-
Lys
CTT
[ENA]
¡û
>W1710026284
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188847
188772
-
Lys
CTT
[ENA]
¡û
>W1710026285
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188722
188647
-
Lys
CTT
[ENA]
¡û
>W1710026286
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188597
188522
-
Lys
CTT
[ENA]
¡û
>W1710026287
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188472
188397
-
Lys
CTT
[ENA]
¡û
>W1710026288
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188347
188272
-
Lys
CTT
[ENA]
¡û
>W1710026289
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188222
188147
-
Lys
CTT
[ENA]
¡û
>W1710026290
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
188097
188022
-
Lys
CTT
[ENA]
¡û
>W1710026292
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187845
187770
-
Lys
CTT
[ENA]
¡û
>W1710026293
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187720
187645
-
Lys
CTT
[ENA]
¡û
>W1710026294
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187595
187520
-
Lys
CTT
[ENA]
¡û
>W1710026295
AWTO01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
187470
187395
-
Lys
CTT
[ENA]
¡û
>W1710026344
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
98095
98020
-
Lys
CTT
[ENA]
¡û
>W1710026345
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97970
97895
-
Lys
CTT
[ENA]
¡û
>W1710026346
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97845
97770
-
Lys
CTT
[ENA]
¡û
>W1710026347
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97720
97645
-
Lys
CTT
[ENA]
¡û
>W1710026348
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
97595
97520
-
Lys
CTT
[ENA]
¡û
>W1710026458
AWTQ01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
75285
75210
-
Lys
CTT
[ENA]
¡û
>W1710026459
AWTQ01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
75160
75085
-
Lys
CTT
[ENA]
¡û
>W1710026460
AWTQ01000033
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
75035
74960
-
Lys
CTT
[ENA]
¡û
>W1710087299
BDQJ01000002
Betaproteobacteria
Comamonas thiooxydans testosteroni [BDQJ]
333923
333998
+
Lys
CTT
[ENA]
¡û
>W1710087300
BDQJ01000002
Betaproteobacteria
Comamonas thiooxydans testosteroni [BDQJ]
334048
334123
+
Lys
CTT
[ENA]
¡û
>W1710764675
LIOM01000001
Betaproteobacteria
Comamonas thiooxydans [LIOM]
496388
496313
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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