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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259030 (28 seq.)
>W131063634
ANKZ01000002
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
287917
287842
-
Met
CAT
[ENA]
¡û
>WENV180693242
OCZS011101686
[OCZS] soil metagenome; soil
142
217
+
Ile2
CAT
[ENA]
¢þ
>ENV08001815
ABOG01012049
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
41
113
+
Met
CAT
[ENA]
¡û
>C181047921
CP020964
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP412 [CP020964]
3450795
3450720
-
Met
CAT
-
¡û
>C181047981
CP020967
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6164 [CP020967]
1824384
1824309
-
Met
CAT
-
¡û
>C181048006
CP020971
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6546R [CP020971]
3454428
3454503
+
Met
CAT
-
¡û
>C181048085
CP020975
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6982 [CP020975]
1722312
1722237
-
Met
CAT
-
¡û
>C191008962
CP012048
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli ISO18C2 [CP012048]
4409002
4408927
-
Met
CAT
-
¡û
>C191009175
CP012057
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli ISO98C12 [CP012057]
4408689
4408614
-
Met
CAT
-
¡û
>C191009229
CP012060
Gammaproteobacteria
Xanthomonas sp. ISO98C4 [CP012060]
4414747
4414672
-
Met
CAT
-
¡û
>C191009283
CP012063
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli ISO18C8 [CP012063]
4406607
4406532
-
Met
CAT
-
¡û
>W1910004509
AVER02000015
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP 6546 [AVER]
86203
86128
-
Met
CAT
[ENA]
¡û
>C141004281
CP005990
Gammaproteobacteria
Spiribacter curvatus UAH-SP71 [CP005990]
92495
92420
-
Met
CAT
[Ensembl]
¡û
>W1911498673
OCYQ01000123
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP412 [OCYQ]
85701
85776
+
Met
CAT
[ENA]
¡û
>W1911498776
OCYS01000134
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP7430 [OCYS]
85701
85776
+
Met
CAT
[ENA]
¡û
>W1911498830
OCYT01000140
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6984 [OCYT]
85701
85776
+
Met
CAT
[ENA]
¡û
>W1911499223
OCZD01000243
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6164 [OCZD]
8001
8076
+
Met
CAT
[ENA]
¡û
>W1511366307
JSFA02000020
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 3035 [JSFA]
30713
30788
+
Met
CAT
[ENA]
¡û
>W1511397630
JTCU02000119
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 301 [JTCU]
24564
24489
-
Met
CAT
[ENA]
¡û
>W1511397640
JTCV02000007
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1420 [JTCV]
24566
24491
-
Met
CAT
[ENA]
¡û
>W1511489784
JWTF02000021
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1811 [JWTF]
24755
24680
-
Met
CAT
[ENA]
¡û
>W1511489843
JWTG02000032
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1680 [JWTG]
24566
24491
-
Met
CAT
[ENA]
¡û
>W1511489896
JWTH02000055
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 220 [JWTH]
24566
24491
-
Met
CAT
[ENA]
¡û
>W1511489969
JWTI02000071
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1138 [JWTI]
24566
24491
-
Met
CAT
[ENA]
¡û
>W1511506085
JXLV02000072
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli XCP123 [JXLV]
109644
109719
+
Met
CAT
[ENA]
¡û
>C131016254
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
110232
110157
-
Met
CAT
[Ensembl]
¡û
>W1610587315
LDJP01000059
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
30927
31002
+
Met
CAT
[ENA]
¡û
>W1710706445
LDJP01000059
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
30927
31002
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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