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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259101 (35 seq.)
>W1711107366
LTSS01000082
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
39173
39246
+
Glu
CTC
[ENA]
¡û
>W1711107367
LTSS01000082
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
53548
53623
+
Glu
CTC
[ENA]
¡û
>W1711114798
LTZP01000068
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
74
1
-
Glu
CTC
[ENA]
¡û
>W1711114800
LTZP01000069
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
158
83
-
Glu
CTC
[ENA]
¡û
>W131204382
ATBY01000006
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
49498
49571
+
Glu
CTC
[ENA]
¡û
>W131204383
ATBY01000006
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
61239
61314
+
Glu
CTC
[ENA]
¡û
>C171002030
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
1020710
1020783
+
Glu
CTC
-
¡û
>C171002031
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
1020991
1021066
+
Glu
CTC
-
¡û
>W131219795
ATYV01000018
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
69810
69735
-
Glu
CTC
[ENA]
¡û
>W131219796
ATYV01000018
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
69529
69454
-
Glu
CTC
[ENA]
¡û
>WENV182645314
OJLY01008749
[OJLY] metagenome; surface
664
737
+
Glu
CTC
[ENA]
¢þ
>WENV182646385
OJMA01007755
[OJMA] metagenome; surface
510
583
+
Glu
CTC
[ENA]
¢þ
>WENV170685936
LFRM01116643
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
368
441
+
Glu
CTC
[ENA]
¢þ
>C191094624
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
967988
967915
-
Glu
CTC
-
¡û
>C191114549
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
1258213
1258286
+
Glu
CTC
-
¡û
>W141563974
JIAJ01000008
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
152229
152304
+
Glu
CTC
[ENA]
¡û
>W141563975
JIAJ01000008
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
153016
153091
+
Glu
CTC
[ENA]
¡û
>W09113400
ABYP01000021
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
50402
50475
+
Glu
CTC
[ENA]
¡û
>W09113401
ABYP01000021
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
64777
64852
+
Glu
CTC
[ENA]
¡û
>W09123821
ACHF01000023
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
39902
39975
+
Glu
CTC
[ENA]
¡û
>W09123822
ACHF01000023
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
54267
54342
+
Glu
CTC
[ENA]
¡û
>W1911596493
PNHF01000003
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
64079
64006
-
Glu
CTC
[ENA]
¡û
>W1810187395
PKHO01000002
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
99015
98942
-
Glu
CTC
[ENA]
¡û
>W1810187396
PKHO01000002
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
87226
87153
-
Glu
CTC
[ENA]
¡û
>W1511351388
JRNE01000085
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
1957
1882
-
Glu
CTC
[ENA]
¡û
>W1511351389
JRNE01000085
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
1683
1608
-
Glu
CTC
[ENA]
¡û
>W1511461066
JVMD01000018
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
75103
75178
+
Glu
CTC
[ENA]
¡û
>W1511461067
JVMD01000018
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
75449
75524
+
Glu
CTC
[ENA]
¡û
>W1511585606
LAYS01000003
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
24369
24294
-
Glu
CTC
[ENA]
¡û
>W1610068220
BCRD01000005
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
242095
242020
-
Glu
CTC
[ENA]
¡û
>C131005387
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
1431531
1431606
+
Glu
CTC
[Ensembl]
¡û
>C131005388
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
1432318
1432393
+
Glu
CTC
[Ensembl]
¡û
>W1710065593
BCRD01000005
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
242095
242020
-
Glu
CTC
[ENA]
¡û
>W1710605209
FWWS01000007
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
23406
23333
-
Glu
CTC
[ENA]
¡û
>W1710605210
FWWS01000007
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
9030
8955
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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