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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25916 (40 seq.)
>C171002408
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
2091513
2091424
-
Ser
GCT
-
¡û
>C025634
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
208033
208122
+
Ser
GCT
-
¡û
>C025803
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
735496
735407
-
Ser
GCT
[Ensembl]
¡û
>W141070766
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
215811
215722
-
Ser
GCT
[ENA]
¡û
>W141082665
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
18637
18726
+
Ser
GCT
[ENA]
¡û
>WENV181407962
OGCH01000294
[OGCH] hot springs metagenome; hot springs
12267
12356
+
Ser
GCT
[ENA]
¢þ
>C08010914
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
771180
771094
-
Ser
GCT
[Ensembl]
¡û
>WENV170676179
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
3012
2923
-
Ser
GCT
[ENA]
¢þ
>WENV170676773
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
1131
1042
-
Ser
GCT
[ENA]
¢þ
>W09107414
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
33233
33144
-
Ser
GCT
[ENA]
¡û
>W09112245
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
33658
33569
-
Ser
GCT
[ENA]
¡û
>C141011545
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
737586
737497
-
Ser
GCT
-
¡û
>W1910635440
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
251234
251145
-
Ser
GCT
[ENA]
¡û
>W1910635498
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
2445
2534
+
Ser
GCT
[ENA]
¡û
>C09110666
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
487700
487611
-
Ser
GCT
[Ensembl]
¡û
>C151004290
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
775948
775859
-
Ser
GCT
[Ensembl]
¡û
>C151004336
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
720604
720515
-
Ser
GCT
[Ensembl]
¡û
>C151030650
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
764993
764904
-
Ser
GCT
[Ensembl]
¡û
>C151074594
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
208036
208125
+
Ser
GCT
[Ensembl]
¡û
>C151076948
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
208036
208125
+
Ser
GCT
[Ensembl]
¡û
>C151076994
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
208036
208125
+
Ser
GCT
[Ensembl]
¡û
>W10105817
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
205149
205238
+
Ser
GCT
[ENA]
¡û
>C10113489
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
859326
859415
+
Ser
GCT
[Ensembl]
¡û
>W11108137
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
205149
205238
+
Ser
GCT
[ENA]
¡û
>W11180815
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
204853
204942
+
Ser
GCT
[ENA]
¡û
>C121009787
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
2026091
2026002
-
Ser
GCT
[Ensembl]
¡û
>W121062184
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
203750
203661
-
Ser
GCT
[ENA]
¡û
>C131012484
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
208036
208125
+
Ser
GCT
-
¡û
>W1610540360
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
164933
164844
-
Ser
GCT
[ENA]
¡û
>W1610540373
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
91873
91784
-
Ser
GCT
[ENA]
¡û
>W1610540452
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
153206
153117
-
Ser
GCT
[ENA]
¡û
>W1610540464
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
90700
90789
+
Ser
GCT
[ENA]
¡û
>W1610612925
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
3012
2923
-
Ser
GCT
[ENA]
¡û
>W1610613163
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1131
1042
-
Ser
GCT
[ENA]
¡û
>W1710643381
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
164933
164844
-
Ser
GCT
[ENA]
¡û
>W1710643394
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
91873
91784
-
Ser
GCT
[ENA]
¡û
>W1710643473
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
153206
153117
-
Ser
GCT
[ENA]
¡û
>W1710643485
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
90700
90789
+
Ser
GCT
[ENA]
¡û
>W1710734207
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
3012
2923
-
Ser
GCT
[ENA]
¡û
>W1710734370
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1131
1042
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK