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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259164 (24 seq.)
>W1710996545
LQBN01000001
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
671731
671806
+
His
GTG
[ENA]
¡û
>W1710996618
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1163455
1163380
-
His
GTG
[ENA]
¡û
>W131164351
ARAR01000003
Gammaproteobacteria
Hydrogenovibrio halophilus DSM 15072 [ARAR]
950937
951012
+
His
GTG
[ENA]
¡û
>W131186720
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
582749
582674
-
His
GTG
[ENA]
¡û
>W1711585459
MNZS01000054
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
1591
1666
+
His
GTG
[ENA]
¡û
>C025379
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
794000
793925
-
His
GTG
[Ensembl]
¡û
>W141170944
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
831860
831785
-
His
GTG
[ENA]
¡û
>W141279855
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
770659
770584
-
His
GTG
[ENA]
¡û
>WENV170779645
LZQQ01000816
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
870
945
+
His
GTG
[ENA]
¢þ
>WENV170779742
LZQR01000178
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2944
2869
-
His
GTG
[ENA]
¢þ
>C191011665
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2106299
2106374
+
His
GTG
-
¡û
>C191084406
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
763210
763135
-
His
GTG
-
¡û
>C191098465
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1772309
1772234
-
His
GTG
-
¡û
>C191134062
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
879906
879831
-
His
GTG
-
¡û
>C191180151
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
925172
925247
+
His
GTG
-
¡û
>W141700072
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
36021
35946
-
His
GTG
[ENA]
¡û
>W141733786
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
460522
460597
+
His
GTG
[ENA]
¡û
>W141776965
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
37334
37259
-
His
GTG
[ENA]
¡û
>W141777010
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
401141
401066
-
His
GTG
[ENA]
¡û
>W141820270
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1383879
1383954
+
His
GTG
[ENA]
¡û
>W1810185532
PKGB01000004
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
68592
68667
+
His
GTG
[ENA]
¡û
>W1810185533
PKGB01000004
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
113438
113513
+
His
GTG
[ENA]
¡û
>W1610851202
LQBN01000001
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
671731
671806
+
His
GTG
[ENA]
¡û
>W1610851275
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1163455
1163380
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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