This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259176 (32 seq.)
>W1711190862
LWSF01000029
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
5064
4989
-
Ala
GGC
[ENA]
¡û
>W1711749316
MUMK01000098
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
16344
16271
-
Ala
GGC
[ENA]
¡û
>W131091959
AOHO01000074
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
241271
241344
+
Ala
GGC
[ENA]
¡û
>W131186175
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
2157425
2157350
-
Ala
GGC
[ENA]
¡û
>W131191607
ASJB01000062
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
212796
212723
-
Ala
GGC
[ENA]
¡û
>W131202877
ASXH01000173
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
171186
171261
+
Ala
GGC
[ENA]
¡û
>W131011054
AICW01000005
Actinomycetota
Saccharomonospora iraqiensis IQ-H1 [AICW]
7572
7647
+
Ala
GGC
[ENA]
¡û
>W131011106
AICX01000089
Actinomycetota
Saccharomonospora halophila 8 [AICX]
8278
8353
+
Ala
GGC
[ENA]
¡û
>W131011182
AICY01000563
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
224
299
+
Ala
GGC
[ENA]
¡û
>WENV180695455
OCZS013493270
[OCZS] soil metagenome; soil
95
168
+
Ala
GGC
[ENA]
¢þ
>W141278085
JAFB01000035
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
42606
42533
-
Ala
GGC
[ENA]
¡û
>C181016792
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
4676820
4676747
-
Ala
GGC
-
¡û
>C191157671
CP038101
Actinomycetota
Saccharomonospora xinjiangensis 31sw [CP038101]
898640
898715
+
Ala
GGC
-
¡û
>W141711999
JMQG01000039
Actinomycetota
Amycolatopsis mediterranei [JMQG]
57466
57539
+
Ala
GGC
[ENA]
¡û
>W141712162
JMQJ01000025
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
57466
57539
+
Ala
GGC
[ENA]
¡û
>W141806140
JPLW01000007
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
391171
391098
-
Ala
GGC
[ENA]
¡û
>W1910657700
MASW01000001
Actinomycetota
Prauserella muralis DSM 45305 [MASW]
2091874
2091948
+
Ala
GGC
[ENA]
¡û
>W1910812678
MVFD01000007
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
291443
291370
-
Ala
GGC
[ENA]
¡û
>W1911676675
QHHU01000118
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
13638
13711
+
Ala
GGC
[ENA]
¡û
>W1810254922
PQHZ01000020
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
77886
77813
-
Ala
GGC
[ENA]
¡û
>W1810579759
QEQT01000109
Actinomycetota
Prauserella sp. PE36 [QEQT]
56181
56255
+
Ala
GGC
[ENA]
¡û
>C151018973
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
7015331
7015406
+
Ala
GGC
-
¡û
>C10100541
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
1565528
1565455
-
Ala
GGC
[Ensembl]
¡û
>C10112935
CP001683
Actinomycetota
Saccharomonospora viridis DSM 43017 [CP001683]
810489
810564
+
Ala
GGC
[Ensembl]
¡û
>W11181141
AGIT01000024
Actinomycetota
Saccharomonospora iraqiensis YIM 90007 [AGIT]
21987
22062
+
Ala
GGC
[ENA]
¡û
>W121036244
AHLX01000003
Actinomycetota
Saccharomonospora marina XMU15 [AHLX]
123579
123654
+
Ala
GGC
[ENA]
¡û
>W1610992465
LWSF01000029
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
5064
4989
-
Ala
GGC
[ENA]
¡û
>W1710530164
FNON01000008
Actinomycetota
Amycolatopsis xylanica [FNON]
365051
364978
-
Ala
GGC
[ENA]
¡û
>W1710556524
FOKG01000028
Actinomycetota
Amycolatopsis marina [FOKG]
63543
63618
+
Ala
GGC
[ENA]
¡û
>W1710572682
FOWW01000001
Actinomycetota
Amycolatopsis arida deserti [FOWW]
847365
847440
+
Ala
GGC
[ENA]
¡û
>W1710580363
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
8650365
8650438
+
Ala
GGC
[ENA]
¡û
>W1710628112
JPRA01000095
Actinomycetota
Amycolatopsis mediterranei [JPRA]
18751
18678
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK