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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259290 (80 seq.)
>W1711309914
MARF01000050
Bacillota
Clostridium perfringens [MARF]
9399
9474
+
Met
CAT
[ENA]
¡û
>W1711309930
MARF01000066
Bacillota
Clostridium perfringens [MARF]
42694
42619
-
Met
CAT
[ENA]
¡û
>W1711310248
MARJ01000096
Bacillota
Clostridium perfringens [MARJ]
36483
36408
-
Met
CAT
[ENA]
¡û
>W1711310250
MARJ01000099
Bacillota
Clostridium perfringens [MARJ]
9077
9002
-
Met
CAT
[ENA]
¡û
>W1711310482
MARM01000080
Bacillota
Clostridium perfringens [MARM]
30127
30202
+
Met
CAT
[ENA]
¡û
>W1711310506
MARM01000094
Bacillota
Clostridium perfringens [MARM]
22797
22722
-
Met
CAT
[ENA]
¡û
>W1711311062
MARU01000047
Bacillota
Clostridium perfringens [MARU]
54883
54808
-
Met
CAT
[ENA]
¡û
>W1711311072
MARU01000049
Bacillota
Clostridium perfringens [MARU]
30130
30205
+
Met
CAT
[ENA]
¡û
>W1711311310
MARX01000035
Bacillota
Clostridium perfringens [MARX]
42668
42593
-
Met
CAT
[ENA]
¡û
>W1711311311
MARX01000036
Bacillota
Clostridium perfringens [MARX]
22666
22591
-
Met
CAT
[ENA]
¡û
>W1711311671
MASC01000037
Bacillota
Clostridium perfringens [MASC]
28993
29068
+
Met
CAT
[ENA]
¡û
>W1711311686
MASC01000051
Bacillota
Clostridium perfringens [MASC]
43111
43036
-
Met
CAT
[ENA]
¡û
>C171020894
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
598179
598254
+
Met
CAT
-
¡û
>C171020971
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
313869
313794
-
Met
CAT
-
¡û
>WENV180407761
OBUR01000582
[OBUR] human gut metagenome; faeces
3411
3336
-
fMet
CAT
[ENA]
¢þ
>WENV180605434
OCPT01000167
[OCPT] human gut metagenome; human gut
34825
34750
-
fMet
CAT
[ENA]
¢þ
>WENV180605575
OCPT01000335
[OCPT] human gut metagenome; human gut
35071
34996
-
fMet
CAT
[ENA]
¢þ
>WENV181231470
OFEK01030053
[OFEK] activated sludge metagenome; Anaerobic digester
213
138
-
fMet
CAT
[ENA]
¢þ
>WENV181327381
OFLQ01000005
[OFLQ] metagenome; faeces
193387
193462
+
fMet
CAT
[ENA]
¢þ
>WENV181327489
OFLQ01000107
[OFLQ] metagenome; faeces
44869
44794
-
fMet
CAT
[ENA]
¢þ
>WENV181358810
OFMV01016180
[OFMV] human gut metagenome; human gut
2038
2113
+
fMet
CAT
[ENA]
¢þ
>WENV181798392
OGRV01000119
[OGRV] human gut metagenome; fecal sample 3 from infant 4
30523
30448
-
fMet
CAT
[ENA]
¢þ
>WENV181798420
OGRV01000211
[OGRV] human gut metagenome; fecal sample 3 from infant 4
8369
8294
-
fMet
CAT
[ENA]
¢þ
>WENV181805072
OGSH01000506
[OGSH] human gut metagenome; fecal sample 5 from infant 6
8133
8058
-
fMet
CAT
[ENA]
¢þ
>WENV181805168
OGSH01001088
[OGSH] human gut metagenome; fecal sample 5 from infant 6
814
739
-
fMet
CAT
[ENA]
¢þ
>WENV181805774
OGSJ01000476
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
8389
8314
-
fMet
CAT
[ENA]
¢þ
>WENV181805923
OGSJ01001619
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
834
759
-
fMet
CAT
[ENA]
¢þ
>WENV181811263
OGSY01000430
[OGSY] human gut metagenome; fecal sample 5 from infant 8
13536
13461
-
fMet
CAT
[ENA]
¢þ
>WENV181811392
OGSY01001361
[OGSY] human gut metagenome; fecal sample 5 from infant 8
4058
4133
+
fMet
CAT
[ENA]
¢þ
>WENV182412009
OIFQ01010628
[OIFQ] human gut metagenome; stool
354
279
-
fMet
CAT
[ENA]
¢þ
>WENV182613807
OJKA01015539
[OJKA] metagenome; faeces
121
46
-
fMet
CAT
[ENA]
¢þ
>WENV182856261
OKNJ01000049
[OKNJ] human gut metagenome; human gut
12703
12628
-
fMet
CAT
[ENA]
¢þ
>WENV182856277
OKNJ01000213
[OKNJ] human gut metagenome; human gut
2559
2484
-
fMet
CAT
[ENA]
¢þ
>WENV182963504
OKWQ01000688
[OKWQ] human gut metagenome; stool
3966
4041
+
fMet
CAT
[ENA]
¢þ
>WENV183430283
OMBP01016476
[OMBP] human gut metagenome; feces
599
674
+
fMet
CAT
[ENA]
¢þ
>WENV170561001
CZCA01001863
[CZCA] anaerobic digester metagenome; anaerobic digester
10896
10971
+
Met
CAT
[ENA]
¢þ
>WENV170562599
CZCB01003841
[CZCB] anaerobic digester metagenome; anaerobic digester
632
557
-
Met
CAT
[ENA]
¢þ
>WENV170562814
CZCB01005584
[CZCB] anaerobic digester metagenome; anaerobic digester
3120
3195
+
Met
CAT
[ENA]
¢þ
>WENV170563342
CZCB01015489
[CZCB] anaerobic digester metagenome; anaerobic digester
4156
4231
+
Met
CAT
[ENA]
¢þ
>WENV170563836
CZCB01031370
[CZCB] anaerobic digester metagenome; anaerobic digester
1160
1085
-
Met
CAT
[ENA]
¢þ
>WENV170563841
CZCB01031539
[CZCB] anaerobic digester metagenome; anaerobic digester
836
911
+
Met
CAT
[ENA]
¢þ
>WENV170644709
JMBW01066845
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
96
21
-
Met
CAT
[ENA]
¢þ
>WENV170684122
LFRM01021097
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
574
499
-
Met
CAT
[ENA]
¢þ
>WENV170685134
LFRM01074085
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9345
9420
+
Met
CAT
[ENA]
¢þ
>WENV170688552
LFRM01250988
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
18562
18487
-
Met
CAT
[ENA]
¢þ
>C181162240
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
639284
639359
+
Met
CAT
-
¡û
>C181162317
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
350320
350245
-
Met
CAT
-
¡û
>C181214861
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
642401
642476
+
Met
CAT
-
¡û
>C181214937
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
317959
317884
-
Met
CAT
-
¡û
>W141817192
JQKL01000053
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
1173
1098
-
Met
CAT
[ENA]
¡û
>W1910693854
MDJF01000018
Bacillota
Clostridium perfringens 13/0815-D [MDJF]
252841
252916
+
Met
CAT
[ENA]
¡û
>W1910693895
MDJF01000029
Bacillota
Clostridium perfringens 13/0815-D [MDJF]
43576
43501
-
Met
CAT
[ENA]
¡û
>W1910927525
NIOI01000002
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
863896
863971
+
Met
CAT
[ENA]
¡û
>W1910927577
NIOJ01000032
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
38305
38230
-
Met
CAT
[ENA]
¡û
>W1911723623
QRFV01000018
Bacillota
Clostridium perfringens 83921_1_2 [QRFV]
3530
3605
+
Met
CAT
[ENA]
¡û
>W1911723631
QRFV01000049
Bacillota
Clostridium perfringens 83921_1_2 [QRFV]
12767
12692
-
Met
CAT
[ENA]
¡û
>W1911723904
QRHB01000067
Bacillota
Clostridium perfringens 79385-4 [QRHB]
3530
3605
+
Met
CAT
[ENA]
¡û
>W1911723907
QRHB01000076
Bacillota
Clostridium perfringens 79385-4 [QRHB]
485
560
+
Met
CAT
[ENA]
¡û
>W1810178733
PJSH01000002
Bacillota
Clostridium perfringens W1319 [PJSH]
168465
168390
-
Met
CAT
[ENA]
¡û
>W1810178778
PJSH01000006
Bacillota
Clostridium perfringens W1319 [PJSH]
29439
29514
+
Met
CAT
[ENA]
¡û
>W1810179343
PJSP01000005
Bacillota
Clostridium perfringens SAF-1 [PJSP]
21313
21238
-
Met
CAT
[ENA]
¡û
>W1810179346
PJSP01000019
Bacillota
Clostridium perfringens SAF-1 [PJSP]
311
386
+
Met
CAT
[ENA]
¡û
>W1810179569
PJSR01000002
Bacillota
Clostridium perfringens PC5 [PJSR]
80462
80387
-
Met
CAT
[ENA]
¡û
>W1810179576
PJSR01000005
Bacillota
Clostridium perfringens PC5 [PJSR]
25960
26035
+
Met
CAT
[ENA]
¡û
>W1810179824
PJSV01000010
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
29431
29506
+
Met
CAT
[ENA]
¡û
>W1810179839
PJSV01000016
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
16933
17008
+
Met
CAT
[ENA]
¡û
>W1810180030
PJSY01000007
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
30309
30234
-
Met
CAT
[ENA]
¡û
>W1810180078
PJSY01000037
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
15384
15309
-
Met
CAT
[ENA]
¡û
>W1810180216
PJTA01000004
Bacillota
Clostridium perfringens FC2 [PJTA]
260834
260909
+
Met
CAT
[ENA]
¡û
>W1810180229
PJTA01000007
Bacillota
Clostridium perfringens FC2 [PJTA]
43186
43111
-
Met
CAT
[ENA]
¡û
>W1810180641
PJTF01000018
Bacillota
Clostridium perfringens 96-7415 [PJTF]
96921
96846
-
Met
CAT
[ENA]
¡û
>W1810180656
PJTF01000027
Bacillota
Clostridium perfringens 96-7415 [PJTF]
43336
43261
-
Met
CAT
[ENA]
¡û
>W1810180875
PJTI01000007
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
138458
138533
+
Met
CAT
[ENA]
¡û
>W1810180878
PJTI01000010
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
43184
43109
-
Met
CAT
[ENA]
¡û
>W1810180942
PJTJ01000015
Bacillota
Clostridium perfringens T3381 [PJTJ]
44088
44013
-
Met
CAT
[ENA]
¡û
>W1511706125
LGTE01000012
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
89260
89185
-
Met
CAT
[ENA]
¡û
>W1610605702
LFSF01000011
Bacillota
Clostridiales bacterium DTU073 [LFSF]
9345
9420
+
Met
CAT
[ENA]
¡û
>W1610605723
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
18562
18487
-
Met
CAT
[ENA]
¡û
>W1710726989
LFSF01000011
Bacillota
Clostridiales bacterium DTU073 [LFSF]
9345
9420
+
Met
CAT
[ENA]
¡û
>W1710727010
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
18562
18487
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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