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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26080 (80 seq.)
>W1710806409
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
3874650
3874561
-
Ser
GGA
[ENA]
¡û
>W1710813401
LKJO01000075
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
96532
96443
-
Ser
GGA
[ENA]
¡û
>W1710815734
LKKN01000052
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
12027
12116
+
Ser
GGA
[ENA]
¡û
>W1711079652
LSOF01000010
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
367
278
-
Ser
GGA
[ENA]
¡û
>W1711101731
LTNB01000855
Gammaproteobacteria
Pseudomonas sp. HMSC75E02 [LTNB]
6886
6797
-
Ser
GGA
[ENA]
¡û
>W1711174191
LWDZ01000016
Gammaproteobacteria
Pseudomonas argentinensis [LWDZ]
25497
25408
-
Ser
GGA
[ENA]
¡û
>W1711212893
LXJR01000008
Gammaproteobacteria
Pseudomonas sp. 21C1 [LXJR]
806
717
-
Ser
GGA
[ENA]
¡û
>W1711256260
LYSP01000027
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
48280
48191
-
Ser
GGA
[ENA]
¡û
>W1711292897
LZYC01000079
Gammaproteobacteria
Pseudomonas sp. EGD-AKN5 [LZYC]
277582
277493
-
Ser
GGA
[ENA]
¡û
>W1711945845
NBMS01000041
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
170585
170674
+
Ser
GGA
[ENA]
¡û
>C171044802
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
2471444
2471533
+
Ser
GGA
-
¡û
>C171101451
CP019947
Gammaproteobacteria
Pseudomonas sp. CC6-YY-74 [CP019947]
1607751
1607662
-
Ser
GGA
-
¡û
>W131061464
ANIR01000009
Gammaproteobacteria
Pseudomonas sp. M1 [ANIR]
483214
483303
+
Ser
GGA
[ENA]
¡û
>WENV181415080
OGCL01003720
[OGCL] hot springs metagenome; Hot spring water
97
8
-
Ser
GGA
[ENA]
¢þ
>W141143686
AWSQ01000009
Gammaproteobacteria
Pseudomonas taeanensis MS-3 [AWSQ]
473959
474048
+
Ser
GGA
[ENA]
¡û
>W141217451
AZVO01000014
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I3 [AZVO]
512009
512098
+
Ser
GGA
[ENA]
¡û
>W141230785
BATI01000044
Gammaproteobacteria
Pseudomonas alcaligenes NBRC 14159 [BATI]
1351
1262
-
Ser
GGA
[ENA]
¡û
>WENV170000171
AERA01019299
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
419
330
-
Ser
GGA
[ENA]
¢þ
>WENV170537194
CEWQ01024834
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
490
579
+
Ser
GGA
[ENA]
¢þ
>WENV170710648
LNFM01002293
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19305
19216
-
Ser
GGA
[ENA]
¢þ
>WENV170779613
LZQQ01000322
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
3927
4016
+
Ser
GGA
[ENA]
¢þ
>WENV170966844
MTEY01011029
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
23323
23412
+
Ser
GGA
[ENA]
¢þ
>C181000774
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
3597630
3597541
-
Ser
GGA
-
¡û
>W141727331
JNCW01000002
Gammaproteobacteria
Pseudomonas sp. AAC [JNCW]
519755
519844
+
Ser
GGA
[ENA]
¡û
>W1910549218
FZPC01000011
Gammaproteobacteria
Pseudomonas delhiensis RLD-1 [FZPC]
142202
142291
+
Ser
GGA
[ENA]
¡û
>W1910743715
MHZK01000048
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 [MHZK]
11057
10968
-
Ser
GGA
[ENA]
¡û
>W1910810364
MUJY01000132
Gammaproteobacteria
Pseudomonas sp. PIC25 [MUJY]
91475
91564
+
Ser
GGA
[ENA]
¡û
>W1910810790
MUNN01000133
Gammaproteobacteria
Pseudomonas indica PIC105 [MUNN]
25992
26081
+
Ser
GGA
[ENA]
¡û
>W1911071631
NMQV01000006
Gammaproteobacteria
Pseudomonas fluvialis ASS-1 [NMQV]
75970
76059
+
Ser
GGA
[ENA]
¡û
>W1911246954
NSLB01000002
Gammaproteobacteria
Pseudomonas sp. HAR-UPW-AIA-41 [NSLB]
55437
55348
-
Ser
GGA
[ENA]
¡û
>W1911586045
PISI01000023
Gammaproteobacteria
Pseudomonas citronellolis DSM 50332 [PISI]
278203
278114
-
Ser
GGA
[ENA]
¡û
>W1911681495
QJUL01000030
Gammaproteobacteria
Pseudomonas dryadis P6B [QJUL]
65523
65612
+
Ser
GGA
[ENA]
¡û
>W1911681531
QJUM01000002
Gammaproteobacteria
Pseudomonas dryadis P26B [QJUM]
63839
63750
-
Ser
GGA
[ENA]
¡û
>W1911681605
QJUN01000007
Gammaproteobacteria
Pseudomonas sp. FRB 230 P27B [QJUN]
15424
15335
-
Ser
GGA
[ENA]
¡û
>W1911681656
QJUO01000009
Gammaproteobacteria
Stutzerimonas kirkiae P4C [QJUO]
120115
120204
+
Ser
GGA
[ENA]
¡û
>W1911681776
QJUQ01000030
Gammaproteobacteria
Stutzerimonas kirkiae P28C [QJUQ]
67148
67237
+
Ser
GGA
[ENA]
¡û
>W1911681819
QJUR01000014
Gammaproteobacteria
Stutzerimonas kirkiae P30C [QJUR]
112645
112734
+
Ser
GGA
[ENA]
¡û
>W1810017271
BGPP01000004
Gammaproteobacteria
Pseudomonas citronellolis LA18T [BGPP]
205750
205661
-
Ser
GGA
[ENA]
¡û
>W1810154083
PIYS01000003
Gammaproteobacteria
Pseudomonas pharmacofabricae ZYSR67-Z [PIYS]
310585
310674
+
Ser
GGA
[ENA]
¡û
>W1810378819
PXJI01000126
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
7728
7639
-
Ser
GGA
[ENA]
¡û
>W1810474382
QAIG01000007
Gammaproteobacteria
Pseudomonas sp. HMWF032 [QAIG]
234277
234188
-
Ser
GGA
[ENA]
¡û
>W1810475704
QAJE01000380
Gammaproteobacteria
Pseudomonas sp. HMWF010 [QAJE]
25860
25771
-
Ser
GGA
[ENA]
¡û
>W1810607779
QGSL01000088
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
24872
24961
+
Ser
GGA
[ENA]
¡û
>W1810670670
QJRX01000005
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
156989
156900
-
Ser
GGA
[ENA]
¡û
>W1810685119
QKZB01000002
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I1 [QKZB]
584469
584558
+
Ser
GGA
[ENA]
¡û
>C151001263
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
2475386
2475475
+
Ser
GGA
[Ensembl]
¡û
>C151100220
HG322950
Gammaproteobacteria
Pseudomonas knackmussii B13 [HG322950]
3842640
3842729
+
Ser
GGA
[Ensembl]
¡û
>WENV11100529
AERA01019299
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
419
330
-
Ser
GGA
[ENA]
¡û
>C11117226
CP002727
Gammaproteobacteria
Pseudomonas fulva 12-X [CP002727]
2890182
2890093
-
Ser
GGA
[Ensembl]
¡û
>W1511307146
JPMY01000038
Gammaproteobacteria
Pseudomonas sp. ML96 [JPMY]
38563
38474
-
Ser
GGA
[ENA]
¡û
>W1511483887
JWMC01000060
Gammaproteobacteria
Pseudomonas sp. PI1 [JWMC]
11144
11233
+
Ser
GGA
[ENA]
¡û
>W1511525019
JYFT01000005
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
28576
28665
+
Ser
GGA
[ENA]
¡û
>W1511530404
JYKO01000033
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
732606
732695
+
Ser
GGA
[ENA]
¡û
>C161077582
CP014784
Gammaproteobacteria
Pseudomonas alcaligenes NEB 585 [CP014784]
3066260
3066171
-
Ser
GGA
-
¡û
>C161092056
CP015878
Gammaproteobacteria
Pseudomonas citronellolis SJTE-3 [CP015878]
2252439
2252350
-
Ser
GGA
[Ensembl]
¡û
>W121064907
AJMR01000214
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AJMR]
18310
18221
-
Ser
GGA
[ENA]
¡û
>W1610670136
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
3874650
3874561
-
Ser
GGA
[ENA]
¡û
>W1610677498
LKJO01000075
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
96532
96443
-
Ser
GGA
[ENA]
¡û
>W1610679831
LKKN01000052
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
12027
12116
+
Ser
GGA
[ENA]
¡û
>W1610918562
LSOF01000010
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
367
278
-
Ser
GGA
[ENA]
¡û
>W1611050113
LZYC01000079
Gammaproteobacteria
Pseudomonas sp. EGD-AKN5 [LZYC]
277582
277493
-
Ser
GGA
[ENA]
¡û
>W1710075720
BCZY01000015
Gammaproteobacteria
Pseudomonas citronellolis NBRC 103043 [BCZY]
89365
89454
+
Ser
GGA
[ENA]
¡û
>W1710075965
BDAC01000025
Gammaproteobacteria
Pseudomonas indica NBRC 103045 [BDAC]
4631
4542
-
Ser
GGA
[ENA]
¡û
>W1710082265
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
12262
12351
+
Ser
GGA
[ENA]
¡û
>W1710082292
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
6926053
6926142
+
Ser
GGA
[ENA]
¡û
>W1710505104
FMTL01000001
Gammaproteobacteria
Pseudomonas peli [FMTL]
26847
26758
-
Ser
GGA
[ENA]
¡û
>W1710516721
FNCT01000010
Gammaproteobacteria
Pseudomonas benzenivorans [FNCT]
191437
191348
-
Ser
GGA
[ENA]
¡û
>W1710517985
FNDS01000001
Gammaproteobacteria
Pseudomonas panipatensis [FNDS]
694369
694280
-
Ser
GGA
[ENA]
¡û
>W1710518558
FNEC01000022
Gammaproteobacteria
Pseudomonas delhiensis [FNEC]
58939
59028
+
Ser
GGA
[ENA]
¡û
>W1710519937
FNFD01000023
Gammaproteobacteria
Pseudomonas indica [FNFD]
73316
73405
+
Ser
GGA
[ENA]
¡û
>W1710523975
FNIJ01000006
Gammaproteobacteria
Pseudomonas jinjuensis [FNIJ]
146528
146617
+
Ser
GGA
[ENA]
¡û
>W1710529198
FNNU01000005
Gammaproteobacteria
Pseudomonas kuykendallii [FNNU]
429641
429552
-
Ser
GGA
[ENA]
¡û
>W1710542493
FNZE01000017
Gammaproteobacteria
Pseudomonas linyingensis [FNZE]
75344
75255
-
Ser
GGA
[ENA]
¡û
>W1710550823
FOFP01000005
Gammaproteobacteria
Pseudomonas cuatrocienegasensis [FOFP]
1150
1061
-
Ser
GGA
[ENA]
¡û
>W1710555591
FOJP01000006
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
63137
63226
+
Ser
GGA
[ENA]
¡û
>W1710558273
FOLS01000002
Gammaproteobacteria
Pseudomonas citronellolis [FOLS]
89710
89799
+
Ser
GGA
[ENA]
¡û
>W1710559352
FOMO01000002
Gammaproteobacteria
Pseudomonas straminea [FOMO]
49271
49182
-
Ser
GGA
[ENA]
¡û
>W1710572772
FOWX01000041
Gammaproteobacteria
Pseudomonas borbori [FOWX]
12672
12583
-
Ser
GGA
[ENA]
¡û
>W1710596516
FTMP01000014
Gammaproteobacteria
Pseudomonas alcaligenes [FTMP]
65640
65729
+
Ser
GGA
[ENA]
¡û
>W1710598239
FTNW01000001
Gammaproteobacteria
Pseudomonas alcaligenes [FTNW]
320065
320154
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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