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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260950 (80 seq.)
>W1710864344
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
587826
587901
+
Val
CAC
[ENA]
¡û
>W1710867911
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
777033
777108
+
Val
CAC
[ENA]
¡û
>W1710870082
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
516454
516381
-
Val
CAC
[ENA]
¡û
>W1710870606
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2010611
2010536
-
Val
CAC
[ENA]
¡û
>W1710876530
LMPH01000004
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
225709
225784
+
Val
CAC
[ENA]
¡û
>W1710878583
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
493172
493097
-
Val
CAC
[ENA]
¡û
>W1710879763
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
445752
445827
+
Val
CAC
[ENA]
¡û
>W1711003299
LQGY01000025
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
26767
26694
-
Val
CAC
[ENA]
¡û
>W1711009298
LQQP01000034
Actinomycetota
Microbacterium sp. T32 [LQQP]
89973
90048
+
Val
CAC
[ENA]
¡û
>W1711082394
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
1045384
1045459
+
Val
CAC
[ENA]
¡û
>W131184985
ARTJ01000002
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
823495
823570
+
Val
CAC
[ENA]
¡û
>W131217904
ATXF01000004
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
238397
238322
-
Val
CAC
[ENA]
¡û
>W131217953
ATXG01000002
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
284851
284776
-
Val
CAC
[ENA]
¡û
>W131218457
ATXT01000011
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
335858
335933
+
Val
CAC
[ENA]
¡û
>W1711318582
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
494922
494997
+
Val
CAC
[ENA]
¡û
>W131235578
AULS01000001
Actinomycetota
Microbacterium luticocti DSM 19459 [AULS]
6842
6767
-
Val
CAC
[ENA]
¡û
>W1711385520
MEEH01000040
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
9263
9188
-
Val
CAC
[ENA]
¡û
>W1711501568
MKRT01000028
Actinomycetota
Microbacterium sp. 69-10 [MKRT]
11328
11255
-
Val
CAC
[ENA]
¡û
>W1711503411
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
200572
200647
+
Val
CAC
[ENA]
¡û
>W1711719873
MTIO01000001
Actinomycetota
Microbacterium oleivorans [MTIO]
433650
433725
+
Val
CAC
[ENA]
¡û
>W1711724778
MTQM01000009
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
25614
25689
+
Val
CAC
[ENA]
¡û
>C171065833
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
265067
264992
-
Val
CAC
-
¡û
>WENV180691650
OCZS010173507
[OCZS] soil metagenome; soil
630
557
-
Val
CAC
[ENA]
¢þ
>W141223182
BADA01000312
Actinomycetota
Microbacterium sp. B19 [BADA]
2893
2818
-
Val
CAC
[ENA]
¡û
>W141256090
CBVQ010000195
Actinomycetota
Microbacterium sp. C448 [CBVQ]
11263
11336
+
Val
CAC
[ENA]
¡û
>C181169630
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1753754
1753827
+
Val
CAC
-
¡û
>C191074823
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
1381681
1381607
-
Val
CAC
-
¡û
>C191092355
CP032624
Actinomycetota
Gryllotalpicola protaetiae 2DFW10M-5 [CP032624]
3400038
3400112
+
Val
CAC
-
¡û
>C191130416
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
2271038
2271111
+
Val
CAC
-
¡û
>C191143838
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
2494323
2494248
-
Val
CAC
-
¡û
>C191144023
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
3379293
3379368
+
Val
CAC
-
¡û
>C191183345
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
1935739
1935666
-
Val
CAC
-
¡û
>W1910181911
BJML01000004
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
57607
57534
-
Val
CAC
[ENA]
¡û
>W1910182585
BJNA01000008
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
60911
60836
-
Val
CAC
[ENA]
¡û
>W1910373876
FUHU01000026
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
187109
187036
-
Val
CAC
[ENA]
¡û
>W1910377806
FUKR01000057
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
9873
9799
-
Val
CAC
[ENA]
¡û
>W1911075271
NMUM01000005
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
491582
491509
-
Val
CAC
[ENA]
¡û
>W1911140328
NOYP01000046
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
70593
70668
+
Val
CAC
[ENA]
¡û
>W1911566512
PCOW01000019
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
70225
70300
+
Val
CAC
[ENA]
¡û
>W1810064589
PDVO02000009
Actinomycetota
Microbacterium esteraromaticum MM1 [PDVO]
153237
153163
-
Val
CAC
[ENA]
¡û
>W1810234131
PPEE01000004
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
396139
396066
-
Val
CAC
[ENA]
¡û
>W1810248590
PQBR01000007
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
338995
339068
+
Val
CAC
[ENA]
¡û
>W1810569000
QEFA01000002
Actinomycetota
Agromyces badenianii 845 [QEFA]
306510
306437
-
Val
CAC
[ENA]
¡û
>W1810787041
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
96711
96784
+
Val
CAC
[ENA]
¡û
>W1810860839
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
2176855
2176782
-
Val
CAC
[ENA]
¡û
>W1810861324
QTTU01000002
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
592406
592331
-
Val
CAC
[ENA]
¡û
>W1810861490
QTTX01000002
Actinomycetota
Microbacterium sp. 1294 [QTTX]
1082218
1082292
+
Val
CAC
[ENA]
¡û
>W1810869751
QUAB01000041
Actinomycetota
Microbacterium bovistercoris NEAU-LLE [QUAB]
32548
32475
-
Val
CAC
[ENA]
¡û
>W1810886028
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
709920
709847
-
Val
CAC
[ENA]
¡û
>W1510063987
CDAR01000010
Actinomycetota
Microbacterium gorillae G3 [CDAR]
333949
333874
-
Val
CAC
[ENA]
¡û
>W1511432622
JUGQ01000002
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
370901
370976
+
Val
CAC
[ENA]
¡û
>W1511528685
JYIT01000085
Actinomycetota
Microbacterium azadirachtae DSM 23848 [JYIT]
61151
61226
+
Val
CAC
[ENA]
¡û
>C161061345
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
2677405
2677480
+
Val
CAC
[Ensembl]
¡û
>C161063218
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
2111515
2111440
-
Val
CAC
[Ensembl]
¡û
>W1610050185
BBFP01000048
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
4115
4190
+
Val
CAC
[ENA]
¡û
>W1610050272
BBFR01000258
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
100
175
+
Val
CAC
[ENA]
¡û
>W1610069527
BCSO01000001
Actinomycetota
Pseudoclavibacter alba NBRC 15616 [BCSO]
441561
441486
-
Val
CAC
[ENA]
¡û
>W1610726690
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
587826
587901
+
Val
CAC
[ENA]
¡û
>W1610730257
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
777033
777108
+
Val
CAC
[ENA]
¡û
>W1610732428
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
516454
516381
-
Val
CAC
[ENA]
¡û
>W1610732952
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2010611
2010536
-
Val
CAC
[ENA]
¡û
>W1610738876
LMPH01000004
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
225709
225784
+
Val
CAC
[ENA]
¡û
>W1610740929
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
493172
493097
-
Val
CAC
[ENA]
¡û
>W1610742109
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
445752
445827
+
Val
CAC
[ENA]
¡û
>W1610853864
LQGY01000025
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
26767
26694
-
Val
CAC
[ENA]
¡û
>W1610857818
LQQP01000034
Actinomycetota
Microbacterium sp. T32 [LQQP]
89973
90048
+
Val
CAC
[ENA]
¡û
>W1610921179
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
1045384
1045459
+
Val
CAC
[ENA]
¡û
>W1611061925
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
494922
494997
+
Val
CAC
[ENA]
¡û
>W1710046584
BBFP01000048
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
4115
4190
+
Val
CAC
[ENA]
¡û
>W1710046671
BBFR01000258
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
100
175
+
Val
CAC
[ENA]
¡û
>W1710066900
BCSO01000001
Actinomycetota
Pseudoclavibacter alba NBRC 15616 [BCSO]
441561
441486
-
Val
CAC
[ENA]
¡û
>W1710516606
FNCR01000004
Actinomycetota
Microbacterium sp. 77mftsu3.1 [FNCR]
333945
333870
-
Val
CAC
[ENA]
¡û
>W1710521742
FNGQ01000001
Actinomycetota
Microbacterium azadirachtae cl140 [FNGQ]
564047
563972
-
Val
CAC
[ENA]
¡û
>W1710525403
FNJN01000003
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
238040
238113
+
Val
CAC
[ENA]
¡û
>W1710538391
FNUN01000001
Actinomycetota
Microbacterium azadirachtae cl12a [FNUN]
563777
563702
-
Val
CAC
[ENA]
¡û
>W1710538555
FNUQ01000001
Actinomycetota
Microbacterium azadirachtae cl152 [FNUQ]
564478
564403
-
Val
CAC
[ENA]
¡û
>W1710574961
FOYR01000001
Actinomycetota
Microbacterium azadirachtae cl127 [FOYR]
575106
575031
-
Val
CAC
[ENA]
¡û
>W1710575404
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2321221
2321146
-
Val
CAC
[ENA]
¡û
>W1710594677
FSRJ01000001
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
722602
722527
-
Val
CAC
[ENA]
¡û
>W1710597988
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
459423
459348
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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