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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261192 (28 seq.)
>W1711207163
LXFF01000018
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
24087
24162
+
Phe
GAA
[ENA]
¡û
>WENV180016019
FSTW01000392
[FSTW] metagenome; soil
336
261
-
Phe
GAA
[ENA]
¢þ
>WENV180693516
OCZS011296970
[OCZS] soil metagenome; soil
163
88
-
Phe
GAA
[ENA]
¢þ
>WENV180695271
OCZS013252867
[OCZS] soil metagenome; soil
140
65
-
Phe
GAA
[ENA]
¢þ
>WENV181165754
OEIS01155092
[OEIS] soil metagenome; soil
81
7
-
Phe
GAA
[ENA]
¢þ
>WENV170987318
MWVX01167854
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
145
70
-
Phe
GAA
[ENA]
¢þ
>C151036027
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
526127
526202
+
Phe
GAA
[Ensembl]
¡û
>C151036042
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
961716
961641
-
Phe
GAA
[Ensembl]
¡û
>C11101108
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
531301
531376
+
Phe
GAA
[Ensembl]
¡û
>C11101123
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
954590
954515
-
Phe
GAA
[Ensembl]
¡û
>C11101145
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
525640
525715
+
Phe
GAA
[Ensembl]
¡û
>C11101160
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
932957
932882
-
Phe
GAA
[Ensembl]
¡û
>W121006897
AFXR01000068
Bacillota
Candidatus Arthromitus sp. SFB-1 [AFXR]
2811
2736
-
Phe
GAA
[ENA]
¡û
>W121006901
AFXR01000219
Bacillota
Candidatus Arthromitus sp. SFB-1 [AFXR]
4077
4152
+
Phe
GAA
[ENA]
¡û
>W121006920
AFXS01000075
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
3788
3713
-
Phe
GAA
[ENA]
¡û
>W121006922
AFXS01000115
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
3514
3589
+
Phe
GAA
[ENA]
¡û
>W121006951
AFXT01000221
Bacillota
Candidatus Arthromitus sp. SFB-3 [AFXT]
149
224
+
Phe
GAA
[ENA]
¡û
>W121006953
AFXT01000251
Bacillota
Candidatus Arthromitus sp. SFB-3 [AFXT]
237
312
+
Phe
GAA
[ENA]
¡û
>W121006958
AFXU01000012
Bacillota
Candidatus Arthromitus sp. SFB-4 [AFXU]
6154
6079
-
Phe
GAA
[ENA]
¡û
>W121006960
AFXU01000018
Bacillota
Candidatus Arthromitus sp. SFB-4 [AFXU]
406
331
-
Phe
GAA
[ENA]
¡û
>W121006990
AFXV01000083
Bacillota
Candidatus Arthromitus sp. SFB-5 [AFXV]
2233
2308
+
Phe
GAA
[ENA]
¡û
>W121006997
AFXV01000291
Bacillota
Candidatus Arthromitus sp. SFB-5 [AFXV]
7462
7387
-
Phe
GAA
[ENA]
¡û
>W121007027
AFXW01000110
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
20385
20310
-
Phe
GAA
[ENA]
¡û
>W121007030
AFXW01000118
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
31010
30935
-
Phe
GAA
[ENA]
¡û
>W121021254
AGVP01000007
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
215898
215973
+
Phe
GAA
[ENA]
¡û
>W121021256
AGVP01000007
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
623222
623147
-
Phe
GAA
[ENA]
¡û
>WENV077433
AAFX01037775
Soil microbial communities from Minnesota Farm
247
324
+
Phe
GAA
[ENA]
>W1610995193
LXFF01000018
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
24087
24162
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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