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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261213 (104 seq.)
>W1710787108
LJJH01000172
Gammaproteobacteria
Stenotrophomonas maltophilia [LJJH]
45055
44980
-
Met
CAT
[ENA]
¡û
>W1711003833
LQIG01000961
Gammaproteobacteria
Stenotrophomonas maltophilia [LQIG]
894
819
-
Met
CAT
[ENA]
¡û
>W1711115274
LUAA01000123
Gammaproteobacteria
Stenotrophomonas sp. HMSC10F07 [LUAA]
22827
22902
+
Met
CAT
[ENA]
¡û
>W1711259458
LYVH01000012
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVH]
106018
106093
+
Met
CAT
[ENA]
¡û
>W1711259576
LYVJ01000005
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVJ]
249341
249266
-
Met
CAT
[ENA]
¡û
>W1711259627
LYVK01000002
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVK]
280216
280141
-
Met
CAT
[ENA]
¡û
>W131215602
ATVD01000003
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
77619
77544
-
Met
CAT
[ENA]
¡û
>W1711384962
MEDO01000015
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
22751
22823
+
Met
CAT
[ENA]
¡û
>W1711386247
MEFB01000060
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
1339
1414
+
Met
CAT
[ENA]
¡û
>W1711503679
MKTU01000082
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
12909
12981
+
Met
CAT
[ENA]
¡û
>W1711716729
MTGD01000013
Gammaproteobacteria
Stenotrophomonas maltophilia [MTGD]
48361
48436
+
Met
CAT
[ENA]
¡û
>w021833
AAVZ01000017
Gammaproteobacteria
Stenotrophomonas maltophilia R551-3 [AAVZ]
52808
52736
-
Met
CAT
[ENA]
¡û
>C171122947
CP021768
Gammaproteobacteria
Stenotrophomonas sp. WZN-1 [CP021768]
3951785
3951710
-
Met
CAT
-
¡û
>WENV180693643
OCZS011410439
[OCZS] soil metagenome; soil
244
171
-
Ile2
CAT
[ENA]
¢þ
>W141094244
AVCI01000003
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
36239
36164
-
Met
CAT
[ENA]
¡û
>W141245774
CALM01001187
Gammaproteobacteria
Stenotrophomonas maltophilia RA8 [CALM]
6339
6264
-
Met
CAT
[ENA]
¡û
>WENV183727751
PJTP01000147
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
42712
42637
-
Ile2
CAT
[ENA]
¢þ
>WENV183731929
PJTU01000012
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
151147
151072
-
Ile2
CAT
[ENA]
¢þ
>WENV183732062
PJTV01000004
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
151105
151030
-
Ile2
CAT
[ENA]
¢þ
>WENV170018618
BBPD01000143
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10211
10286
+
Met
CAT
[ENA]
¢þ
>WENV170018713
BBPD01000475
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2
77
+
Met
CAT
[ENA]
¢þ
>WENV170018753
BBPD01000675
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2985
3060
+
Met
CAT
[ENA]
¢þ
>WENV170020110
BBPE01002971
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
9630
9705
+
Met
CAT
[ENA]
¢þ
>WENV170578059
FSSH01008470
[FSSH] freshwater metagenome; drinking water
3682
3757
+
Met
CAT
[ENA]
¢þ
>WENV170965898
MTEV01008711
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
3528
3453
-
Met
CAT
[ENA]
¢þ
>C181180381
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
2348182
2348254
+
Met
CAT
-
¡û
>C181200057
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
3081837
3081909
+
Met
CAT
-
¡û
>C181209570
LS483377
Gammaproteobacteria
Stenotrophomonas maltophilia NCTC10258 [LS483377]
3921472
3921397
-
Met
CAT
-
¡û
>C191079508
CP031741
Gammaproteobacteria
Stenotrophomonas sp. G4 [CP031741]
3970989
3970914
-
Met
CAT
-
¡û
>C191164025
CP039255
Gammaproteobacteria
Stenotrophomonas sp. PAMC25021 [CP039255]
2644504
2644579
+
Met
CAT
-
¡û
>C191186045
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
296119
296044
-
Met
CAT
-
¡û
>C191206709
LR134324
Gammaproteobacteria
Stenotrophomonas maltophilia NCTC10259 [LR134324]
1277887
1277812
-
Met
CAT
-
¡û
>W141820682
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
883769
883844
+
Met
CAT
[ENA]
¡û
>W141820827
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
359040
358965
-
Met
CAT
[ENA]
¡û
>W141821246
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
2008248
2008323
+
Met
CAT
[ENA]
¡û
>W1910549151
FZPB01000001
Gammaproteobacteria
Stenotrophomonas lactitubi YR347 [FZPB]
1715294
1715219
-
Met
CAT
[ENA]
¡û
>W1910648298
LXXL01000107
Gammaproteobacteria
Stenotrophomonas maltophilia SM-30540 [LXXL]
31863
31788
-
Met
CAT
[ENA]
¡û
>W1910648347
LXXM01000192
Gammaproteobacteria
Stenotrophomonas maltophilia SM-5815 [LXXM]
109362
109437
+
Met
CAT
[ENA]
¡û
>W1910648615
LXXQ01000170
Gammaproteobacteria
Stenotrophomonas maltophilia SM-1911 [LXXQ]
31512
31437
-
Met
CAT
[ENA]
¡û
>W1910786252
MQWN01000043
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2007 [MQWN]
265424
265349
-
Met
CAT
[ENA]
¡û
>W1910786364
MQWO01000057
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2008 [MQWO]
257083
257008
-
Met
CAT
[ENA]
¡û
>W1910786473
MQWQ01000036
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2010 [MQWQ]
62248
62173
-
Met
CAT
[ENA]
¡û
>W1910786692
MQWT01000076
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2012_STM2 [MQWT]
89436
89511
+
Met
CAT
[ENA]
¡û
>W1910787060
MQWZ01000038
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2005 [MQWZ]
208373
208298
-
Met
CAT
[ENA]
¡û
>W1910787332
MQXD01000049
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2008 [MQXD]
189357
189282
-
Met
CAT
[ENA]
¡û
>W1910787627
MQXH01000067
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2003_STM2 [MQXH]
15450
15375
-
Met
CAT
[ENA]
¡û
>W1910787666
MQXI01000098
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2006 [MQXI]
3369
3294
-
Met
CAT
[ENA]
¡û
>W1910787859
MQXL01000056
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2010 [MQXL]
107681
107606
-
Met
CAT
[ENA]
¡û
>W1910788042
MQXN01000087
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2012 [MQXN]
89108
89183
+
Met
CAT
[ENA]
¡û
>W1910788433
MQXT01000048
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2006_STM2 [MQXT]
14500
14425
-
Met
CAT
[ENA]
¡û
>W1910788746
MQXY01000044
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2009_STM1 [MQXY]
82061
82136
+
Met
CAT
[ENA]
¡û
>W1910788842
MQYA01000024
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2012_STM1 [MQYA]
82094
82169
+
Met
CAT
[ENA]
¡û
>W1910789182
MQYF01000030
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2005_STM1 [MQYF]
33517
33442
-
Met
CAT
[ENA]
¡û
>W1910789275
MQYG01000058
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2005_STM2 [MQYG]
56910
56985
+
Met
CAT
[ENA]
¡û
>W1910789313
MQYH01000046
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2007 [MQYH]
89560
89635
+
Met
CAT
[ENA]
¡û
>W1910789663
MQYM01000059
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2011 [MQYM]
88927
89002
+
Met
CAT
[ENA]
¡û
>W1910789748
MQYN01000074
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2012 [MQYN]
64725
64650
-
Met
CAT
[ENA]
¡û
>W1910789856
MQYP01000044
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2009 [MQYP]
39035
38960
-
Met
CAT
[ENA]
¡û
>W1910790041
MQYS01000066
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2012_STM1 [MQYS]
46732
46657
-
Met
CAT
[ENA]
¡û
>W1910790127
MQYT01000028
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2012_STM2 [MQYT]
46645
46570
-
Met
CAT
[ENA]
¡û
>W1910790409
MQYX01000056
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2009 [MQYX]
114474
114549
+
Met
CAT
[ENA]
¡û
>W1910790481
MQYY01000038
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2010 [MQYY]
113540
113615
+
Met
CAT
[ENA]
¡û
>W1910791575
MQZO01000072
Gammaproteobacteria
Stenotrophomonas maltophilia BB_2010 [MQZO]
34736
34661
-
Met
CAT
[ENA]
¡û
>W1910791795
MQZR01000062
Gammaproteobacteria
Stenotrophomonas maltophilia BB_2013 [MQZR]
215806
215731
-
Met
CAT
[ENA]
¡û
>W1910791853
MQZS01000046
Gammaproteobacteria
Stenotrophomonas maltophilia SanG_2010 [MQZS]
5095
5020
-
Met
CAT
[ENA]
¡û
>W1910821928
MWIO01000018
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
38701
38626
-
Met
CAT
[ENA]
¡û
>W1910886892
NEQO01000012
Gammaproteobacteria
Stenotrophomonas maltophilia NS26 [NEQO]
129097
129022
-
Met
CAT
[ENA]
¡û
>W1910887081
NEQR01000004
Gammaproteobacteria
Stenotrophomonas maltophilia EP5 [NEQR]
1092422
1092347
-
Met
CAT
[ENA]
¡û
>W1910887214
NEQT01000024
Gammaproteobacteria
Stenotrophomonas maltophilia EA23 [NEQT]
138740
138665
-
Met
CAT
[ENA]
¡û
>W1910887904
NERE01000003
Gammaproteobacteria
Stenotrophomonas maltophilia G51 [NERE]
105594
105519
-
Met
CAT
[ENA]
¡û
>W1910896615
NFZS01000006
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
3896
3821
-
Met
CAT
[ENA]
¡û
>W1910942051
NJGC01000014
Gammaproteobacteria
Stenotrophomonas maltophilia DF07 [NJGC]
31510
31435
-
Met
CAT
[ENA]
¡û
>W1911719565
QQXJ01000001
Gammaproteobacteria
Stenotrophomonas sp. TEPEL [QQXJ]
494089
494164
+
Met
CAT
[ENA]
¡û
>W1911770904
QXJI01000003
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
197755
197830
+
Met
CAT
[ENA]
¡û
>W1810078100
PEJS01000001
Gammaproteobacteria
Stenotrophomonas indicatrix WS40 [PEJS]
3642624
3642549
-
Met
CAT
[ENA]
¡û
>W1810101920
PGTW01000001
Gammaproteobacteria
Stenotrophomonas sp. YR399 [PGTW]
537894
537969
+
Met
CAT
[ENA]
¡û
>W1810149958
PITP01000805
Gammaproteobacteria
Escherichia coli 3512 [PITP]
92
167
+
Met
CAT
[ENA]
¡û
>W1810354852
PVLF01000012
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
48378
48453
+
Met
CAT
[ENA]
¡û
>W1810452272
PZOY01000005
Gammaproteobacteria
Stenotrophomonas panacihumi GSS15 [PZOY]
393088
393013
-
Met
CAT
[ENA]
¡û
>W1810541248
QDID01000001
Gammaproteobacteria
Stenotrophomonas maltophilia SM7059 [QDID]
359426
359351
-
Met
CAT
[ENA]
¡û
>W1810580815
QETL01000042
Gammaproteobacteria
Stenotrophomonas sp. SPM [QETL]
16736
16661
-
Met
CAT
[ENA]
¡û
>W1810586384
QFFI01000004
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
158833
158908
+
Met
CAT
[ENA]
¡û
>W1810597213
QGHC01000002
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
160258
160333
+
Met
CAT
[ENA]
¡û
>W1510018831
BBUM02000083
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
12408
12333
-
Met
CAT
[ENA]
¡û
>W1510655035
CVWF01000266
Gammaproteobacteria
Pseudomonas aeruginosa E15_London_28_01_14 [CVWF]
24818
24743
-
Met
CAT
[ENA]
¡û
>W1511352636
JROI01000016
Gammaproteobacteria
Oleiagrimonas soli 3.5X [JROI]
197293
197368
+
Met
CAT
[ENA]
¡û
>W1511433903
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
4097462
4097537
+
Met
CAT
[ENA]
¡û
>W1511458590
JVJN01000180
Gammaproteobacteria
Stenotrophomonas maltophilia 376_SMAL [JVJN]
57657
57732
+
Met
CAT
[ENA]
¡û
>W1511467462
JVTA01000319
Gammaproteobacteria
Stenotrophomonas maltophilia 1339_SMAL [JVTA]
26359
26284
-
Met
CAT
[ENA]
¡û
>W1511477213
JWFT01000401
Gammaproteobacteria
Stenotrophomonas maltophilia 1025_SMAL [JWFT]
57255
57330
+
Met
CAT
[ENA]
¡û
>C161078238
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
2947759
2947834
+
Met
CAT
[Ensembl]
¡û
>W121113105
ALOG01000016
Gammaproteobacteria
Stenotrophomonas maltophilia Ab55555 [ALOG]
361845
361770
-
Met
CAT
[ENA]
¡û
>W1610650963
LJJH01000172
Gammaproteobacteria
Stenotrophomonas maltophilia [LJJH]
45055
44980
-
Met
CAT
[ENA]
¡û
>W1610854427
LQIG01000961
Gammaproteobacteria
Stenotrophomonas maltophilia [LQIG]
894
819
-
Met
CAT
[ENA]
¡û
>W1611021547
LYVH01000012
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVH]
106018
106093
+
Met
CAT
[ENA]
¡û
>W1611021665
LYVJ01000005
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVJ]
249341
249266
-
Met
CAT
[ENA]
¡û
>W1611021716
LYVK01000002
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVK]
280216
280141
-
Met
CAT
[ENA]
¡û
>W1710515274
FNBR01000002
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
821175
821250
+
Met
CAT
[ENA]
¡û
>W1710541142
FNYC01000002
Gammaproteobacteria
Frateuria terrea [FNYC]
366875
366950
+
Met
CAT
[ENA]
¡û
>W1710548685
FODZ01000001
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
519193
519118
-
Met
CAT
[ENA]
¡û
>W1710555227
FOJE01000005
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
114884
114959
+
Met
CAT
[ENA]
¡û
>W1710573376
FOXL01000003
Gammaproteobacteria
Frateuria terrea [FOXL]
366875
366950
+
Met
CAT
[ENA]
¡û
>W1710582995
FQUK01000035
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
16129
16204
+
Met
CAT
[ENA]
¡û
>W1710603069
FUYT01000013
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
167092
167167
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK