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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261586 (67 seq.)
>W1710810656
LKHP01000002
Bacillota
Caloramator mitchellensis [LKHP]
218846
218771
-
Val
TAC
[ENA]
¡û
>W1710810660
LKHP01000004
Bacillota
Caloramator mitchellensis [LKHP]
167492
167417
-
Val
TAC
[ENA]
¡û
>W1710810675
LKHP01000009
Bacillota
Caloramator mitchellensis [LKHP]
30084
30159
+
Val
TAC
[ENA]
¡û
>W1711046932
LROR01000057
Bacillota
Clostridium coskatii [LROR]
7270
7345
+
Val
TAC
[ENA]
¡û
>W1711046996
LROS01000033
Bacillota
Clostridium ragsdalei P11 [LROS]
118061
118136
+
Val
TAC
[ENA]
¡û
>WENV180042603
LQAF01011425
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
32
107
+
Val
TAC
[ENA]
¢þ
>WENV180043904
LQAJ01000052
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
109549
109474
-
Val
TAC
[ENA]
¢þ
>WENV180043913
LQAJ01000066
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
30261
30186
-
Val
TAC
[ENA]
¢þ
>WENV180044201
LQAJ01021487
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
255
180
-
Val
TAC
[ENA]
¢þ
>WENV180240829
OBDE01015796
[OBDE] human gut metagenome; human gut
419
344
-
Val
TAC
[ENA]
¢þ
>WENV180714871
ODFW01001100
[ODFW] human metagenome; G_DNA_Stool
17028
17103
+
Val
TAC
[ENA]
¢þ
>WENV180735029
ODGZ01051847
[ODGZ] human metagenome; G_DNA_Supragingival plaque
13
88
+
Val
TAC
[ENA]
¢þ
>WENV180808542
ODJK01000186
[ODJK] human metagenome; G_DNA_Subgingival plaque
31590
31665
+
Val
TAC
[ENA]
¢þ
>WENV180858594
ODLC01013381
[ODLC] human metagenome; G_DNA_Tongue dorsum
1176
1251
+
Val
TAC
[ENA]
¢þ
>WENV180950445
ODUH01000002
[ODUH] human metagenome; G_DNA_Subgingival plaque
48557
48632
+
Val
TAC
[ENA]
¢þ
>WENV181613235
OGLT01004047
[OGLT] metagenome; Human gut stool
136
61
-
Val
TAC
[ENA]
¢þ
>W141167346
AXUD01000001
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
38196
38121
-
Val
TAC
[ENA]
¡û
>W141167367
AXUD01000004
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
297527
297452
-
Val
TAC
[ENA]
¡û
>WENV182255707
OHTD01002593
[OHTD] human gut metagenome; feces
146
71
-
Val
TAC
[ENA]
¢þ
>WENV182938843
OKVE01002691
[OKVE] human gut metagenome; human gut
3150
3075
-
Val
TAC
[ENA]
¢þ
>WENV183094826
OLND01000240
[OLND] human gut metagenome; faeces
69347
69422
+
Val
TAC
[ENA]
¢þ
>WENV183124121
OLNW01006417
[OLNW] human gut metagenome; faeces
6799
6874
+
Val
TAC
[ENA]
¢þ
>WENV183149768
OLOO01020941
[OLOO] human gut metagenome; faeces
117
192
+
Val
TAC
[ENA]
¢þ
>WENV183161115
OLOV01002453
[OLOV] human gut metagenome; faeces
132
57
-
Val
TAC
[ENA]
¢þ
>WENV183266639
OLRT01006308
[OLRT] human gut metagenome; faeces
1194
1119
-
Val
TAC
[ENA]
¢þ
>WENV183350649
OLWX01003827
[OLWX] human gut metagenome; feces
3172
3097
-
Val
TAC
[ENA]
¢þ
>WENV183705712
PDWI01002165
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
720
795
+
Val
TAC
[ENA]
¢þ
>WENV183746884
PPCM01000032
[PPCM] marine sediment metagenome; marine sediment
324933
324858
-
Val
TAC
[ENA]
¢þ
>WENV183746935
PPCM01000048
[PPCM] marine sediment metagenome; marine sediment
246965
247040
+
Val
TAC
[ENA]
¢þ
>WENV183747163
PPCM01000335
[PPCM] marine sediment metagenome; marine sediment
53032
52957
-
Val
TAC
[ENA]
¢þ
>WENV183747289
PPCM01000747
[PPCM] marine sediment metagenome; marine sediment
21190
21115
-
Val
TAC
[ENA]
¢þ
>WENV170454564
CEVA01047217
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
110
185
+
Val
TAC
[ENA]
¢þ
>WENV170678526
LDZU01001456
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2222
2297
+
Val
TAC
[ENA]
¢þ
>WENV170692426
LGOV01007216
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1184
1109
-
Val
TAC
[ENA]
¢þ
>WENV170692575
LGOV01015078
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
7620
7545
-
Val
TAC
[ENA]
¢þ
>C191065516
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
238004
238079
+
Val
TAC
-
¡û
>C191138167
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1832904
1832829
-
Val
TAC
-
¡û
>C191138173
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1760886
1760811
-
Val
TAC
-
¡û
>C191138187
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1758983
1758908
-
Val
TAC
-
¡û
>W1910237765
FPLH01000007
Bacillota
Urinicoccus massiliensis FC2 [FPLH]
2881
2956
+
Val
TAC
[ENA]
¡û
>W1910237771
FPLH01000013
Bacillota
Urinicoccus massiliensis FC2 [FPLH]
142341
142416
+
Val
TAC
[ENA]
¡û
>W1910237796
FPLH01000014
Bacillota
Urinicoccus massiliensis FC2 [FPLH]
149445
149370
-
Val
TAC
[ENA]
¡û
>C141008097
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2515990
2516065
+
Val
TAC
[Ensembl]
¡û
>W1810797793
QRMS01000001
Bacillota
Emergencia timonensis AM07-24 [QRMS]
1105263
1105338
+
Val
TAC
[ENA]
¡û
>W1810797805
QRMS01000002
Bacillota
Emergencia timonensis AM07-24 [QRMS]
567943
567868
-
Val
TAC
[ENA]
¡û
>C10103561
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
256878
256953
+
Val
TAC
[Ensembl]
¡û
>W1511577795
LARA01000033
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
511
586
+
Val
TAC
[ENA]
¡û
>W1511578158
LARA01000146
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
511
436
-
Val
TAC
[ENA]
¡û
>C161041759
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2516135
2516210
+
Val
TAC
-
¡û
>W1610095166
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
685
760
+
Val
TAC
[ENA]
¡û
>W1610095205
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
589966
589891
-
Val
TAC
[ENA]
¡û
>W1610501820
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1206032
1206107
+
Val
TAC
[ENA]
¡û
>W1610501832
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1957164
1957089
-
Val
TAC
[ENA]
¡û
>W1610635747
LITS01000002
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
95006
95081
+
Val
TAC
[ENA]
¡û
>W1610635811
LITT01000023
Bacillota
Clostridium ljungdahlii [LITT]
100274
100349
+
Val
TAC
[ENA]
¡û
>W1610674711
LKHP01000002
Bacillota
Caloramator mitchellensis [LKHP]
218846
218771
-
Val
TAC
[ENA]
¡û
>W1610674715
LKHP01000004
Bacillota
Caloramator mitchellensis [LKHP]
167492
167417
-
Val
TAC
[ENA]
¡û
>W1610674730
LKHP01000009
Bacillota
Caloramator mitchellensis [LKHP]
30084
30159
+
Val
TAC
[ENA]
¡û
>W1610888061
LROR01000057
Bacillota
Clostridium coskatii [LROR]
7270
7345
+
Val
TAC
[ENA]
¡û
>W1610888125
LROS01000033
Bacillota
Clostridium ragsdalei P11 [LROS]
118061
118136
+
Val
TAC
[ENA]
¡û
>W1710097961
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
685
760
+
Val
TAC
[ENA]
¡û
>W1710098000
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
589966
589891
-
Val
TAC
[ENA]
¡û
>W1710495290
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1206032
1206107
+
Val
TAC
[ENA]
¡û
>W1710495302
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1957164
1957089
-
Val
TAC
[ENA]
¡û
>W1710770459
LITR01000005
Bacillota
Clostridium autoethanogenum [LITR]
307777
307702
-
Val
TAC
[ENA]
¡û
>W1710770520
LITS01000002
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
95006
95081
+
Val
TAC
[ENA]
¡û
>W1710770584
LITT01000023
Bacillota
Clostridium ljungdahlii [LITT]
100274
100349
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK