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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263724 (57 seq.)
>W1711219292
LXPH01000001
Gammaproteobacteria
Escherichia coli [LXPH]
2201599
2201674
+
Met
CAT
[ENA]
¡û
>W1711223402
LXSX01000005
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
114848
114923
+
Met
CAT
[ENA]
¡û
>W1711360498
MDJQ01000038
Gammaproteobacteria
Pantoea sp. Ae16 [MDJQ]
185538
185463
-
Met
CAT
[ENA]
¡û
>W141071648
ASJI01000003
Gammaproteobacteria
Pantoea agglomerans Tx10 [ASJI]
115114
115189
+
Met
CAT
[ENA]
¡û
>W141158561
AXOF01000035
Gammaproteobacteria
Pantoea agglomerans Eh318 [AXOF]
147415
147340
-
Met
CAT
[ENA]
¡û
>WENV182837040
OKGB01003038
[OKGB] human gut metagenome; human gut
19
95
+
Ile2
CAT
[ENA]
¢þ
>WENV182865128
OKQI01001312
[OKQI] human gut metagenome; human gut
1788
1713
-
Ile2
CAT
[ENA]
¢þ
>WENV182945221
OKVJ01026266
[OKVJ] human gut metagenome; human gut
219
144
-
Ile2
CAT
[ENA]
¢þ
>WENV182966207
OKWV01000047
[OKWV] human gut metagenome; stool
129842
129917
+
Ile2
CAT
[ENA]
¢þ
>WENV170022863
BCQK01063363
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
5
80
+
Met
CAT
[ENA]
¢þ
>C191077142
CP031649
Gammaproteobacteria
Pantoea agglomerans TH81 [CP031649]
629255
629180
-
Met
CAT
-
¡û
>C191120283
CP034148
Gammaproteobacteria
Pantoea agglomerans L15 [CP034148]
3440909
3440984
+
Met
CAT
-
¡û
>W141728285
JNGC01000001
Gammaproteobacteria
Pantoea agglomerans [JNGC]
3208582
3208657
+
Met
CAT
[ENA]
¡û
>W1910101192
BFXK01000124
Gammaproteobacteria
Escherichia coli KK-P038 [BFXK]
11728
11653
-
Met
CAT
[ENA]
¡û
>C141000033
AP012554
Gammaproteobacteria
Candidatus Pantoea carbekii [AP012554]
415792
415719
-
Met
CAT
-
¡û
>W1910611977
LFZL01000004
Gammaproteobacteria
Klebsiella michiganensis XP-B1 [LFZL]
269125
269200
+
Met
CAT
[ENA]
¡û
>W1911081384
NMZS01000003
Gammaproteobacteria
Pantoea ananatis PANS 99-23 [NMZS]
201167
201092
-
Met
CAT
[ENA]
¡û
>W1911672054
QGAM01000006
Gammaproteobacteria
Pantoea agglomerans CFBP13532 [QGAM]
73120
73045
-
Met
CAT
[ENA]
¡û
>W1810058737
PDKR01000003
Gammaproteobacteria
Candidatus Pantoea edessiphila SoEO [PDKR]
31072
30998
-
Met
CAT
[ENA]
¡û
>W1810058802
PDKT01000003
Gammaproteobacteria
Candidatus Pantoea edessiphila SoEE [PDKT]
30450
30378
-
Met
CAT
[ENA]
¡û
>W1810147274
PIQI01000027
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
132789
132714
-
Met
CAT
[ENA]
¡û
>W1810326437
PUGA01000018
Gammaproteobacteria
Pantoea sp. ARC270 [PUGA]
41511
41436
-
Met
CAT
[ENA]
¡û
>W1810423643
PYTY01000018
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
1106
1031
-
Met
CAT
[ENA]
¡û
>W1810597306
QGHE01000003
Gammaproteobacteria
Pantoea agglomerans PNG 92-11 [QGHE]
155161
155086
-
Met
CAT
[ENA]
¡û
>W1810628549
QICO01000004
Gammaproteobacteria
Pantoea sp. PNA 03-3 [QICO]
348555
348630
+
Met
CAT
[ENA]
¡û
>W1810676958
QKMJ01000005
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
140657
140732
+
Met
CAT
[ENA]
¡û
>W1810686201
QLAA01000005
Gammaproteobacteria
Pantoea agglomerans Bl3 [QLAA]
192270
192345
+
Met
CAT
[ENA]
¡û
>W1810783624
QQXH01000003
Gammaproteobacteria
Pantoea agglomerans BD 1212 [QQXH]
137662
137587
-
Met
CAT
[ENA]
¡û
>W1810785316
QRBM01000002
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
212294
212219
-
Met
CAT
[ENA]
¡û
>W1810786933
QRDI01000005
Gammaproteobacteria
Pantoea ananatis PANS 02-01 [QRDI]
220727
220652
-
Met
CAT
[ENA]
¡û
>C151074272
CP010907
Gammaproteobacteria
Candidatus Pantoea carbekii US [CP010907]
1061329
1061256
-
Met
CAT
[Ensembl]
¡û
>W1510093565
CEGN01000042
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
98865
98790
-
Met
CAT
[ENA]
¡û
>W1510100364
CEMW01000042
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
98865
98790
-
Met
CAT
[ENA]
¡û
>W1511304477
JPKQ01000008
Gammaproteobacteria
Pantoea agglomerans MP2 [JPKQ]
109508
109583
+
Met
CAT
[ENA]
¡û
>W1511357430
JRWI01000010
Gammaproteobacteria
Pantoea stewartii M009 [JRWI]
2487
2412
-
Met
CAT
[ENA]
¡û
>W1511517629
JXXL01000011
Gammaproteobacteria
Pantoea anthophila 11·î2Æü [JXXL]
304643
304718
+
Met
CAT
[ENA]
¡û
>W1511685943
LFQL01000012
Gammaproteobacteria
Pantoea vagans ZBG6 [LFQL]
63723
63648
-
Met
CAT
[ENA]
¡û
>C161068291
CP014207
Gammaproteobacteria
Pantoea ananatis R100 [CP014207]
298921
298996
+
Met
CAT
-
¡û
>W121123741
BAEF01000004
Gammaproteobacteria
Pantoea agglomerans IG1 [BAEF]
210832
210907
+
Met
CAT
[ENA]
¡û
>W121060387
AJFP01000001
Gammaproteobacteria
Pantoea sp. Sc1 [AJFP]
316015
316090
+
Met
CAT
[ENA]
¡û
>W1610444737
FKAD01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAD]
119263
119338
+
Met
CAT
[ENA]
¡û
>W1610460981
FKKH01000001
Gammaproteobacteria
Pantoea sp. 9133 [FKKH]
1692839
1692764
-
Met
CAT
[ENA]
¡û
>W1610589797
LDQY01000009
Gammaproteobacteria
Pantoea ananatis [LDQY]
114711
114786
+
Met
CAT
[ENA]
¡û
>W1610589944
LDRA01000012
Gammaproteobacteria
Pantoea ananatis [LDRA]
211695
211770
+
Met
CAT
[ENA]
¡û
>W1610591211
LDSA01000006
Gammaproteobacteria
Pantoea dispersa [LDSA]
10197
10122
-
Met
CAT
[ENA]
¡û
>W1610591530
LDSF01000006
Gammaproteobacteria
Pantoea dispersa [LDSF]
59990
60065
+
Met
CAT
[ENA]
¡û
>W1610591700
LDSH01000016
Gammaproteobacteria
Pantoea stewartii [LDSH]
76083
76158
+
Met
CAT
[ENA]
¡û
>W1610629000
LIHC01000004
Gammaproteobacteria
Pantoea stewartii [LIHC]
194341
194266
-
Met
CAT
[ENA]
¡û
>W1610850167
LQAK01000012
Gammaproteobacteria
Serratia marcescens [LQAK]
124918
124843
-
Met
CAT
[ENA]
¡û
>W1611003973
LXPH01000001
Gammaproteobacteria
Escherichia coli [LXPH]
2201599
2201674
+
Met
CAT
[ENA]
¡û
>W1611007773
LXSX01000005
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
114848
114923
+
Met
CAT
[ENA]
¡û
>W1710444365
FKAD01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAD]
119263
119338
+
Met
CAT
[ENA]
¡û
>W1710709077
LDQY01000009
Gammaproteobacteria
Pantoea ananatis [LDQY]
114711
114786
+
Met
CAT
[ENA]
¡û
>W1710709224
LDRA01000012
Gammaproteobacteria
Pantoea ananatis [LDRA]
211695
211770
+
Met
CAT
[ENA]
¡û
>W1710710491
LDSA01000006
Gammaproteobacteria
Pantoea dispersa [LDSA]
10197
10122
-
Met
CAT
[ENA]
¡û
>W1710710980
LDSH01000016
Gammaproteobacteria
Pantoea stewartii [LDSH]
76083
76158
+
Met
CAT
[ENA]
¡û
>W1710760133
LIHC01000004
Gammaproteobacteria
Pantoea stewartii [LIHC]
194341
194266
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK