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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264550 (6 seq.)
>WENV181164774
OEIR01357744
[OEIR] soil metagenome; soil
123
200
+
Glu
TTC
[ENA]
¢þ
>WENV183687805
ORMF011193624
[ORMF] groundwater metagenome; groundwater
4192
4115
-
Glu
TTC
[ENA]
¢þ
>WENV183687810
ORMF011194473
[ORMF] groundwater metagenome; groundwater
64
141
+
Glu
TTC
[ENA]
¢þ
>WENV183690055
ORMF011539970
[ORMF] groundwater metagenome; groundwater
1335
1412
+
Glu
TTC
[ENA]
¢þ
>WENV183690424
ORMF011594903
[ORMF] groundwater metagenome; groundwater
1852
1775
-
Glu
TTC
[ENA]
¢þ
>WENV170662263
JXWW01023791
[JXWW] soil metagenome; rice field; organic GM Plot
226
149
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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