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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.265812 (4 seq.)
>WENV180366042
OBOC01101644
[OBOC] marine metagenome; ocean water
41
118
+
fMet
CAT
[ENA]
¢þ
>WENV180392804
OBPP01011941
[OBPP] marine metagenome; ENVO:00002042
354
279
-
fMet
CAT
[ENA]
¢þ
>WENV170682487
LFIK01000195
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
14466
14541
+
Met
CAT
[ENA]
¢þ
>WENV170683106
LFIK01004824
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
8273
8198
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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