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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266356 (22 seq.)
>W131037630
AMFF01000517
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
1578
1503
-
Phe
GAA
[ENA]
¡û
>W131195180
ASSK01000112
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
6414
6489
+
Phe
GAA
[ENA]
¡û
>C171026478
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1208640
1208715
+
Phe
GAA
-
¡û
>C171026534
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1339273
1339348
+
Phe
GAA
-
¡û
>C171026664
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
2027072
2026997
-
Phe
GAA
-
¡û
>C171026723
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1890914
1890839
-
Phe
GAA
-
¡û
>WENV180398780
OBQA01155395
[OBQA] marine metagenome; PVDF and polycarbonate filters
142
67
-
Phe
GAA
[ENA]
¢þ
>WENV181443335
OGDP01004237
[OGDP] metagenome; Human gut stool
3728
3803
+
Phe
GAA
[ENA]
¢þ
>WENV170453775
CEVA01003884
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164
89
-
Phe
GAA
[ENA]
¢þ
>WENV170639495
JFJP01003571
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11415
11490
+
Phe
GAA
[ENA]
¢þ
>WENV170639532
JFJP01004133
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
9271
9346
+
Phe
GAA
[ENA]
¢þ
>WENV170662123
JXWV01205254
[JXWV] soil metagenome; rice field; organic FYM Plot
324
250
-
Phe
GAA
[ENA]
¢þ
>WENV170910649
MDTE01095026
[MDTE] marine metagenome; seawater
914
839
-
Phe
GAA
[ENA]
¢þ
>C191116640
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
3098653
3098578
-
Phe
GAA
-
¡û
>W1910728826
MGXV01000074
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_14 [MGXV]
45830
45757
-
Phe
GAA
[ENA]
¡û
>W1910728927
MGXY01000061
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_14 [MGXY]
105
179
+
Phe
GAA
[ENA]
¡û
>W1910729217
MGYH01000003
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_12 [MGYH]
7107
7181
+
Phe
GAA
[ENA]
¡û
>W1810054398
PDFD01000191
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
1532
1457
-
Phe
GAA
[ENA]
¡û
>W1810763179
QQAX01000002
Gammaproteobacteria
Aquicella lusitana DSM 16500 [QQAX]
130842
130768
-
Phe
GAA
[ENA]
¡û
>W1511337055
JRAV02000044
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
1894
1819
-
Phe
GAA
[ENA]
¡û
>W1511346892
JRHP01000213
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
1600
1525
-
Phe
GAA
[ENA]
¡û
>C161042011
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
77422
77497
+
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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