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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266516 (89 seq.)
>W1710863318
LMFA01000012
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
83317
83392
+
Val
TAC
[ENA]
¡û
>W1710874797
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
98662
98737
+
Val
TAC
[ENA]
¡û
>W1710875224
LMOF01000006
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
1257615
1257540
-
Val
TAC
[ENA]
¡û
>W1710877412
LMQB01000027
Alphaproteobacteria
Rhizobium sp. Leaf371 [LMQB]
301965
302040
+
Val
TAC
[ENA]
¡û
>W1710877507
LMQD01000030
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
80376
80451
+
Val
TAC
[ENA]
¡û
>W1710877520
LMQE01000001
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
322306
322381
+
Val
TAC
[ENA]
¡û
>W1710877584
LMQF01000033
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
89366
89441
+
Val
TAC
[ENA]
¡û
>W1711081069
LSRO01000002
Alphaproteobacteria
Rhizobium sp. 58 [LSRO]
46079
46004
-
Val
TAC
[ENA]
¡û
>W1711081120
LSRP01000035
Alphaproteobacteria
Pararhizobium antarcticum 59 [LSRP]
51092
51017
-
Val
TAC
[ENA]
¡û
>W1711172063
LWBS01000055
Alphaproteobacteria
Rhizobium leguminosarum [LWBS]
134991
135066
+
Val
TAC
[ENA]
¡û
>W1711385408
MEEE01000180
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
863
938
+
Val
TAC
[ENA]
¡û
>W1711385859
MEET01000004
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
225425
225350
-
Val
TAC
[ENA]
¡û
>W1711386007
MEEV01000017
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
72082
72007
-
Val
TAC
[ENA]
¡û
>W1711387095
MEGG01000039
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
76
1
-
Val
TAC
[ENA]
¡û
>W1711489076
MKIM01000028
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
219734
219659
-
Val
TAC
[ENA]
¡û
>W1711489077
MKIM01000028
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
219467
219392
-
Val
TAC
[ENA]
¡û
>W1711489078
MKIM01000028
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
219200
219125
-
Val
TAC
[ENA]
¡û
>W1711489079
MKIM01000028
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
218933
218858
-
Val
TAC
[ENA]
¡û
>W1711667423
MRDM01000002
Alphaproteobacteria
Rhizobium laguerreae [MRDM]
601429
601354
-
Val
TAC
[ENA]
¡û
>C171075914
CP018228
Alphaproteobacteria
Rhizobium leguminosarum Vaf-108 [CP018228]
2376920
2376995
+
Val
TAC
-
¡û
>W131036067
AKIA01000026
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii TA1 [AKIA]
448491
448416
-
Val
TAC
[ENA]
¡û
>W131158537
AQUD01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI565 [AQUD]
878051
877976
-
Val
TAC
[ENA]
¡û
>W131158810
AQUM01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1481 [AQUM]
4618623
4618548
-
Val
TAC
[ENA]
¡û
>W131158874
AQUN01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI943 [AQUN]
1179905
1179830
-
Val
TAC
[ENA]
¡û
>W131160131
AQWI01000049
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Ps8 [AQWI]
59287
59212
-
Val
TAC
[ENA]
¡û
>W131167945
ARDR01000073
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vh3 [ARDR]
75085
75160
+
Val
TAC
[ENA]
¡û
>W131183161
ARRT01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae 248 [ARRT]
1469192
1469117
-
Val
TAC
[ENA]
¡û
>W131214071
ATTN01000009
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli FA23 [ATTN]
117698
117773
+
Val
TAC
[ENA]
¡û
>W131214175
ATTP01000009
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae GB30 [ATTP]
75185
75260
+
Val
TAC
[ENA]
¡û
>W131219503
ATYQ01000003
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae VF39 [ATYQ]
115290
115365
+
Val
TAC
[ENA]
¡û
>W131219956
ATYZ01000003
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae UPM1131 [ATYZ]
567062
566987
-
Val
TAC
[ENA]
¡û
>WENV181311868
OFJB01017182
[OFJB] sludge metagenome; sludge
1527
1452
-
Val
TAC
[ENA]
¢þ
>WENV181401897
OFTX01017388
[OFTX] sludge metagenome; sludge
727
652
-
Val
TAC
[ENA]
¢þ
>WENV181402409
OFTY01001191
[OFTY] sludge metagenome; sludge
1514
1589
+
Val
TAC
[ENA]
¢þ
>WENV183727150
PJTO01007453
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
834
909
+
Val
TAC
[ENA]
¢þ
>WENV183728660
PJTQ01000253
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
11494
11419
-
Val
TAC
[ENA]
¢þ
>WENV183731507
PJTT01000012
[PJTT] soil metagenome; Soil (2) enriched on wood chips
113767
113692
-
Val
TAC
[ENA]
¢þ
>WENV183743590
PJUJ01008258
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
269
194
-
Val
TAC
[ENA]
¢þ
>WENV183745237
PJUL01008177
[PJUL] feces metagenome; Chicken feces enriched on filter paper
508
433
-
Val
TAC
[ENA]
¢þ
>WENV183746538
POYE01000522
[POYE] biofilm metagenome; steel pipe from biofilm reactor
159
234
+
Val
TAC
[ENA]
¢þ
>WENV170679856
LFCJ01000954
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
12904
12829
-
Val
TAC
[ENA]
¢þ
>WENV170701896
LKMJ01000080
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
32249
32174
-
Val
TAC
[ENA]
¢þ
>WENV170704136
LKMJ01023455
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
985
1060
+
Val
TAC
[ENA]
¢þ
>C181068716
CP022564
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae BIHB 1148 [CP022564]
1444841
1444916
+
Val
TAC
-
¡û
>C181110711
CP025012
Alphaproteobacteria
Rhizobium leguminosarum Norway [CP025012]
1349127
1349052
-
Val
TAC
-
¡û
>C191130655
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
1579054
1579129
+
Val
TAC
-
¡û
>W141712223
JMQK01000006
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
236058
235983
-
Val
TAC
[ENA]
¡û
>W141739280
JNNO01000001
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
274925
274850
-
Val
TAC
[ENA]
¡û
>W141776093
JOKI01000008
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
143121
143196
+
Val
TAC
[ENA]
¡û
>W141776139
JOKJ01000009
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
143121
143196
+
Val
TAC
[ENA]
¡û
>W1910226212
FMUD01000001
Alphaproteobacteria
Agrobacterium sp. DSM 25558 [FMUD]
390692
390767
+
Val
TAC
[ENA]
¡û
>W1910226256
FMUE01000001
Alphaproteobacteria
Agrobacterium rosae DSM 25559 [FMUE]
125033
125108
+
Val
TAC
[ENA]
¡û
>W1911422591
NXEJ01000004
Alphaproteobacteria
Agrobacterium rosae NCPPB 1650 [NXEJ]
324114
324039
-
Val
TAC
[ENA]
¡û
>W1911551866
PCDQ01000081
Alphaproteobacteria
Rhizobium tumorigenes 1078 [PCDQ]
139372
139297
-
Val
TAC
[ENA]
¡û
>W1810084192
PEQT01000001
Alphaproteobacteria
Agrobacterium rosae B20.3 [PEQT]
530785
530860
+
Val
TAC
[ENA]
¡û
>W1810346223
PVBK01000002
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
43497
43422
-
Val
TAC
[ENA]
¡û
>W1810608965
QGTR01000001
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
1141868
1141943
+
Val
TAC
[ENA]
¡û
>W1810671278
QJSR01000001
Alphaproteobacteria
Rhizobium sp. PP-CC-3A-592 [QJSR]
326488
326563
+
Val
TAC
[ENA]
¡û
>W1810671333
QJSS01000002
Alphaproteobacteria
Rhizobium sp. PP-WC-1G-195 [QJSS]
76020
76095
+
Val
TAC
[ENA]
¡û
>W1810671454
QJSV01000001
Alphaproteobacteria
Rhizobium sp. PP-F2F-G20b [QJSV]
76608
76683
+
Val
TAC
[ENA]
¡û
>C151101719
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
1126232
1126157
-
Val
TAC
[Ensembl]
¡û
>W1510053001
CCRJ01000005
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
84520
84595
+
Val
TAC
[ENA]
¡û
>W1510053139
CCRM01000007
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRM]
173777
173702
-
Val
TAC
[ENA]
¡û
>W1510053179
CCRN01000006
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRN]
151741
151816
+
Val
TAC
[ENA]
¡û
>W1511358826
JRXL01000007
Alphaproteobacteria
Rhizobium brockwellii bv. trifolii CC275e [JRXL]
1205911
1205986
+
Val
TAC
[ENA]
¡û
>W1511433518
JUHG01000018
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
263008
262933
-
Val
TAC
[ENA]
¡û
>W1511564330
LADQ01000187
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
291
216
-
Val
TAC
[ENA]
¡û
>W1511568619
LAJF01000091
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
92465
92540
+
Val
TAC
[ENA]
¡û
>W1511573958
LANJ01000012
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
46119
46044
-
Val
TAC
[ENA]
¡û
>W1511576783
LAPV01000043
Alphaproteobacteria
Devosia psychrophila Cr7-05 [LAPV]
13280
13355
+
Val
TAC
[ENA]
¡û
>C161095843
CP016286
Alphaproteobacteria
Rhizobium leguminosarum Vaf10 [CP016286]
855525
855450
-
Val
TAC
-
¡û
>W121044125
AHZC01000200
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
339
414
+
Val
TAC
[ENA]
¡û
>W121068175
AJUF01000020
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1455 [AJUF]
480816
480741
-
Val
TAC
[ENA]
¡û
>W1610436543
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 [FJUR]
2057107
2057032
-
Val
TAC
[ENA]
¡û
>W1610616428
LGLV01000005
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
430864
430789
-
Val
TAC
[ENA]
¡û
>W1610725664
LMFA01000012
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
83317
83392
+
Val
TAC
[ENA]
¡û
>W1610737143
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
98662
98737
+
Val
TAC
[ENA]
¡û
>W1610737570
LMOF01000006
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
1257615
1257540
-
Val
TAC
[ENA]
¡û
>W1610739758
LMQB01000027
Alphaproteobacteria
Rhizobium sp. Leaf371 [LMQB]
301965
302040
+
Val
TAC
[ENA]
¡û
>W1610739853
LMQD01000030
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
80376
80451
+
Val
TAC
[ENA]
¡û
>W1610739866
LMQE01000001
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
322306
322381
+
Val
TAC
[ENA]
¡û
>W1610739930
LMQF01000033
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
89366
89441
+
Val
TAC
[ENA]
¡û
>W1610980668
LWBS01000055
Alphaproteobacteria
Rhizobium leguminosarum [LWBS]
134991
135066
+
Val
TAC
[ENA]
¡û
>W1710436279
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 [FJUR]
2057107
2057032
-
Val
TAC
[ENA]
¡û
>W1710550649
FOFL01000004
Alphaproteobacteria
Devosia sp. YR412 [FOFL]
71707
71632
-
Val
TAC
[ENA]
¡û
>W1710552199
FOGR01000003
Alphaproteobacteria
Rhizobium sp. NFR03 [FOGR]
345807
345882
+
Val
TAC
[ENA]
¡û
>W1710558685
FOMB01000035
Alphaproteobacteria
Devosia psychrophila [FOMB]
18330
18255
-
Val
TAC
[ENA]
¡û
>W1710609377
FXWK01000001
Alphaproteobacteria
Devosia lucknowensis [FXWK]
974022
974097
+
Val
TAC
[ENA]
¡û
>W1710737674
LGLV01000005
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
430864
430789
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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