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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266568 (6 seq.)
>WENV170782764
MAAC01011232
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
24733
24656
-
Val
TAC
[ENA]
¢þ
>WENV170782765
MAAC01011232
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
24569
24494
-
Val
TAC
[ENA]
¢þ
>WENV170782766
MAAC01011232
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
24455
24378
-
Val
TAC
[ENA]
¢þ
>WENV170782795
MAAC01011270
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
8337
8412
+
Val
TAC
[ENA]
¢þ
>WENV170782796
MAAC01011270
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
8453
8530
+
Val
TAC
[ENA]
¢þ
>WENV170782823
MAAC01011313
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
13
90
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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