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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266765 (41 seq.)
>WENV170707804
LNAP01034601
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1035
960
-
Lys
TTT
[ENA]
¢þ
>C181019036
CP016303
Gammaproteobacteria
Candidatus Hamiltonella defensa [Bemisia tabaci] MEAM1 [CP016303]
1153572
1153647
+
Lys
TTT
-
¡û
>C191087428
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3412913
3412838
-
Lys
TTT
-
¡û
>C191087429
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3412634
3412559
-
Lys
TTT
-
¡û
>C191087430
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3412356
3412281
-
Lys
TTT
-
¡û
>C191087443
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
1215429
1215354
-
Lys
TTT
-
¡û
>C191126541
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3334808
3334733
-
Lys
TTT
-
¡û
>C191126542
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3334529
3334454
-
Lys
TTT
-
¡û
>C191126543
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3334251
3334176
-
Lys
TTT
-
¡û
>C191126556
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
1158021
1157946
-
Lys
TTT
-
¡û
>C191126618
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3452295
3452220
-
Lys
TTT
-
¡û
>C191126619
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3452016
3451941
-
Lys
TTT
-
¡û
>C191126620
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3451738
3451663
-
Lys
TTT
-
¡û
>C191126633
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
1298986
1298911
-
Lys
TTT
-
¡û
>W141710706
JMPO01000003
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
75459
75384
-
Lys
TTT
[ENA]
¡û
>W141710766
JMPO01000189
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
134
59
-
Lys
TTT
[ENA]
¡û
>W1910584939
JYDF01000081
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
150
75
-
Lys
TTT
[ENA]
¡û
>W1910584947
JYDF01000100
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
41634
41559
-
Lys
TTT
[ENA]
¡û
>W1910584950
JYDF01000117
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
21058
20983
-
Lys
TTT
[ENA]
¡û
>W1910584951
JYDF01000117
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
20917
20842
-
Lys
TTT
[ENA]
¡û
>W1910584975
JYDG01000051
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
40423
40498
+
Lys
TTT
[ENA]
¡û
>W1910584989
JYDG01000095
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
24705
24630
-
Lys
TTT
[ENA]
¡û
>W1910635638
LNJW01000034
Gammaproteobacteria
Candidatus Hamiltonella defensa [LNJW]
472
547
+
Lys
TTT
[ENA]
¡û
>W1910696146
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
1067085
1067160
+
Lys
TTT
[ENA]
¡û
>W1910696203
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
827631
827556
-
Lys
TTT
[ENA]
¡û
>W1910696204
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
827483
827408
-
Lys
TTT
[ENA]
¡û
>W1910696205
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
827349
827274
-
Lys
TTT
[ENA]
¡û
>W1911824518
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
557398
557323
-
Lys
TTT
[ENA]
¡û
>W1911824532
QZWI01000003
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
327498
327573
+
Lys
TTT
[ENA]
¡û
>W1810149975
PITQ01000002
Gammaproteobacteria
Rahnella sp. AA [PITQ]
553941
554016
+
Lys
TTT
[ENA]
¡û
>W1810149984
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
455427
455352
-
Lys
TTT
[ENA]
¡û
>W1810149985
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
455266
455191
-
Lys
TTT
[ENA]
¡û
>W1810149986
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
455144
455069
-
Lys
TTT
[ENA]
¡û
>W1510058870
CCVN01000137
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa [Bemisia tabaci] [CCVN]
2001
2076
+
Lys
TTT
[ENA]
¡û
>W1511402690
JTKH01000015
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
39
114
+
Lys
TTT
[ENA]
¡û
>W1511402697
JTKH01000017
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
781
706
-
Lys
TTT
[ENA]
¡û
>W1511433794
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
258904
258979
+
Lys
TTT
[ENA]
¡û
>W1511433795
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
259183
259258
+
Lys
TTT
[ENA]
¡û
>W1511433796
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
259324
259399
+
Lys
TTT
[ENA]
¡û
>W1511433808
JUHM01000008
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
198453
198378
-
Lys
TTT
[ENA]
¡û
>W121063715
AJLH01000102
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa MED (Bemisia tabaci) [AJLH]
2309
2384
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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