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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266770 (31 seq.)
>W131158402
AQUA01000005
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
72051
71978
-
Ala
GGC
[ENA]
¡û
>WENV180377594
OBON01056145
[OBON] marine metagenome; sea water
214
287
+
Ala
GGC
[ENA]
¢þ
>WENV180391225
OBPM01047051
[OBPM] marine metagenome; ENVO:00002010
201
128
-
Ala
GGC
[ENA]
¢þ
>WENV180591752
OCOV01093347
[OCOV] marine metagenome; ENVO:01000301
200
127
-
Ala
GGC
[ENA]
¢þ
>WENV181368498
OFQL01011838
[OFQL] freshwater metagenome; Freshwater Lake
306
379
+
Ala
GGC
[ENA]
¢þ
>WENV181384531
OFRI01002183
[OFRI] wastewater metagenome; Exp Tend VB 90WW
3885
3812
-
Ala
GGC
[ENA]
¢þ
>WENV181400874
OFSF01030839
[OFSF] wastewater metagenome; Exp Tend VB 100WW
411
338
-
Ala
GGC
[ENA]
¢þ
>WENV181836073
OGVJ01000340
[OGVJ] freshwater metagenome; freshwater
1063
1136
+
Ala
GGC
[ENA]
¢þ
>WENV181841896
OGVS01012701
[OGVS] freshwater metagenome; freshwater
234
307
+
Ala
GGC
[ENA]
¢þ
>WENV181842904
OGVT01039954
[OGVT] freshwater metagenome; freshwater
478
405
-
Ala
GGC
[ENA]
¢þ
>WENV181843204
OGVU01003120
[OGVU] freshwater metagenome; freshwater
728
801
+
Ala
GGC
[ENA]
¢þ
>WENV181848921
OGVZ01034836
[OGVZ] freshwater metagenome; freshwater
178
251
+
Ala
GGC
[ENA]
¢þ
>WENV181850852
OGWE01001131
[OGWE] freshwater metagenome; freshwater
116
189
+
Ala
GGC
[ENA]
¢þ
>WENV181851446
OGWE01036730
[OGWE] freshwater metagenome; freshwater
174
249
+
Ala
GGC
[ENA]
¢þ
>WENV181853274
OGWI01001316
[OGWI] freshwater metagenome; freshwater
1043
1116
+
Ala
GGC
[ENA]
¢þ
>WENV181855851
OGWM01003400
[OGWM] freshwater metagenome; freshwater
757
684
-
Ala
GGC
[ENA]
¢þ
>WENV170572706
FLOH01001190
[FLOH] marine metagenome; water
26004
26077
+
Ala
GGC
[ENA]
¢þ
>WENV170601070
FUWD010154866
[FUWD] metagenome; unknown
247
174
-
Ala
GGC
[ENA]
¢þ
>WENV170609634
FUWD011455379
[FUWD] metagenome; unknown
148
221
+
Ala
GGC
[ENA]
¢þ
>WENV170625943
FUWD013210120
[FUWD] metagenome; unknown
2570
2497
-
Ala
GGC
[ENA]
¢þ
>WENV170634157
FUWD013411578
[FUWD] metagenome; unknown
2570
2497
-
Ala
GGC
[ENA]
¢þ
>C181018660
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
1167956
1167883
-
Ala
GGC
-
¡û
>C181020876
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
398559
398632
+
Ala
GGC
-
¡û
>C181020950
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
418030
418103
+
Ala
GGC
-
¡û
>C181020987
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
389518
389591
+
Ala
GGC
-
¡û
>C181021023
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
349533
349606
+
Ala
GGC
-
¡û
>C181021059
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
352180
352253
+
Ala
GGC
-
¡û
>C181021133
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
388494
388567
+
Ala
GGC
-
¡û
>C181021171
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
358795
358868
+
Ala
GGC
-
¡û
>C181021283
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
344368
344441
+
Ala
GGC
-
¡û
>WENV058219
AACY023321565
Marine microbial communities from Global Ocean Sampling (GOS)
1322
1247
-
Ala
GGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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