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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266774 (28 seq.)
>W131159461
AQVB01000017
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
557
482
-
Thr
TGT
[ENA]
¡û
>W1711116066
LUAS01000033
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
49448
49523
+
Thr
TGT
[ENA]
¡û
>W131169103
AREM01000010
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
726
651
-
Thr
TGT
[ENA]
¡û
>W1711185185
LWNE01000114
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
275
200
-
Thr
TGT
[ENA]
¡û
>W141194204
AYSV01000099
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
981
906
-
Thr
TGT
[ENA]
¡û
>WENV170720454
LSQX01153586
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7358
7433
+
Thr
TGT
[ENA]
¢þ
>WENV170720878
LSQX01170115
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
320
245
-
Thr
TGT
[ENA]
¢þ
>C181049090
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1518711
1518636
-
Thr
TGT
-
¡û
>C181049955
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1502460
1502385
-
Thr
TGT
-
¡û
>C181049992
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1591480
1591405
-
Thr
TGT
-
¡û
>C181050029
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1487589
1487514
-
Thr
TGT
-
¡û
>C181050111
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1544489
1544414
-
Thr
TGT
-
¡û
>C181152586
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
2154953
2154878
-
Thr
TGT
-
¡û
>C191208078
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1553940
1553865
-
Thr
TGT
-
¡û
>W141560361
JHXN01000006
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
74592
74667
+
Thr
TGT
[ENA]
¡û
>W141562694
JHZJ01000011
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
159109
159184
+
Thr
TGT
[ENA]
¡û
>W1910225783
FMSW01000005
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
119403
119478
+
Thr
TGT
[ENA]
¡û
>W1911595550
PNGK01000016
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
43510
43585
+
Thr
TGT
[ENA]
¡û
>W1810701953
QMFX01000001
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
43070
42995
-
Thr
TGT
[ENA]
¡û
>C151046294
CP009238
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [CP009238]
188514
188589
+
Thr
TGT
[Ensembl]
¡û
>W1511350705
JRMO01000007
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
35347
35272
-
Thr
TGT
[ENA]
¡û
>W1511351554
JRNI01000101
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
245
170
-
Thr
TGT
[ENA]
¡û
>C11122629
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
501426
501351
-
Thr
TGT
[Ensembl]
¡û
>W1511458938
JVJW01000082
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
2539
2464
-
Thr
TGT
[ENA]
¡û
>W1511461247
JVMH01000092
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
36182
36257
+
Thr
TGT
[ENA]
¡û
>C121004849
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
1491443
1491368
-
Thr
TGT
[Ensembl]
¡û
>C121009941
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1584549
1584474
-
Thr
TGT
[Ensembl]
¡û
>W1710004118
AFWK01000054
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [AFWK]
9798
9723
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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