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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266792 (41 seq.)
>W131043622
AMPQ01000004
Bacillota
Salimicrobium jeotgali MJ3 [AMPQ]
177140
177215
+
His
GTG
[ENA]
¡û
>W131235214
AULJ01000047
Bacillota
Pontibacillus marinus DSM 16465 [AULJ]
1602
1677
+
His
GTG
[ENA]
¡û
>W1711525555
MLQR01000004
Bacillota
Anaerobacillus alkalilacustris [MLQR]
214736
214811
+
His
GTG
[ENA]
¡û
>W1711525617
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
1179012
1179087
+
His
GTG
[ENA]
¡û
>C015442
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
963605
963677
+
His
GTG
[Ensembl]
¡û
>WENV181202428
OERR01006407
[OERR] metagenome; Caecal content
1080
1005
-
His
GTG
[ENA]
¢þ
>W141263719
CCDL010000003
Bacillota
Oceanobacillus manasiensis [CCDL]
338
413
+
His
GTG
[ENA]
¡û
>C181044087
CP020357
Bacillota
Oceanobacillus iheyensis CHQ24 [CP020357]
865810
865885
+
His
GTG
-
¡û
>C181106546
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
1098709
1098784
+
His
GTG
-
¡û
>C181110843
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
1097372
1097447
+
His
GTG
-
¡û
>W141561285
JHYI01000004
Bacillota
Alkalihalobacterium bogoriense ATCC BAA-922 [JHYI]
110034
110109
+
His
GTG
[ENA]
¡û
>W141561332
JHYI01000039
Bacillota
Alkalihalobacterium bogoriense ATCC BAA-922 [JHYI]
38222
38147
-
His
GTG
[ENA]
¡û
>W1910228813
FNVY01000004
Bacillota
Enterococcus timonensis Marseille-P2817 [FNVY]
3967
4040
+
His
GTG
[ENA]
¡û
>W1910931138
NITA01000243
Bacillota
Bacillus cereus MOD1_Bc222 [NITA]
364
439
+
His
GTG
[ENA]
¡û
>W1910940463
NJAQ01000003
Bacillota
Terribacillus goriensis DSM 18252 [NJAQ]
1908784
1908711
-
His
GTG
[ENA]
¡û
>W1911143684
NPBD01000002
Bacillota
Terribacillus saccharophilus Feb-03 [NPBD]
708220
708147
-
His
GTG
[ENA]
¡û
>W1911143739
NPBE01000010
Bacillota
Terribacillus saccharophilus Jan-04 [NPBE]
100
173
+
His
GTG
[ENA]
¡û
>W1911144037
NPBK01000003
Bacillota
Terribacillus saccharophilus 7517-W [NPBK]
721590
721517
-
His
GTG
[ENA]
¡û
>W1911144175
NPBM01000103
Bacillota
Terribacillus saccharophilus Jan-20 [NPBM]
22
95
+
His
GTG
[ENA]
¡û
>W1911144289
NPBP01000007
Bacillota
Terribacillus saccharophilus 7521 [NPBP]
10047
9974
-
His
GTG
[ENA]
¡û
>W1911173320
NQFP01000081
Bacillota
Terribacillus sp. 7520-G [NQFP]
187
114
-
His
GTG
[ENA]
¡û
>W1911243162
NSGH01000030
Bacillota
Salimicrobium humidisoli WN024 [NSGH]
4114
4189
+
His
GTG
[ENA]
¡û
>W1911332271
NUMR01000134
Bacillota
Bacillus cereus AFS039342 [NUMR]
1062
1137
+
His
GTG
[ENA]
¡û
>W1911348702
NUVT01000127
Bacillota
Bacillus cereus AFS085794 [NUVT]
1588
1513
-
His
GTG
[ENA]
¡û
>W1911504176
OESV01000001
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
1034170
1034245
+
His
GTG
[ENA]
¡û
>W1911748465
QWEH01000002
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
1319
1392
+
His
GTG
[ENA]
¡û
>W1810144872
PIOC01000013
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
1236
1310
+
His
GTG
[ENA]
¡û
>W1810144940
PIOD01000001
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
1708
1783
+
His
GTG
[ENA]
¡û
>W1810144978
PIOD01000023
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
1241
1316
+
His
GTG
[ENA]
¡û
>C151038952
CP008876
Bacillota
Terribacillus goriensis MP602 [CP008876]
1761429
1761356
-
His
GTG
[Ensembl]
¡û
>C161034273
CP011361
Bacillota
Salimicrobium jeotgali MJ3 [CP011361]
1123663
1123738
+
His
GTG
-
¡û
>W1610026988
AVPF01000060
Bacillota
Pontibacillus marinus BH030004 = DSM 16465 [AVPF]
712
787
+
His
GTG
[ENA]
¡û
>W1610027016
AVPG01000001
Bacillota
Pontibacillus litoralis JSM 072002 [AVPG]
131469
131394
-
His
GTG
[ENA]
¡û
>W1610057498
BBXV01000031
Bacillota
Oceanobacillus picturae [BBXV]
6818
6743
-
His
GTG
[ENA]
¡û
>W1710023153
AVPF01000060
Bacillota
Pontibacillus marinus BH030004 = DSM 16465 [AVPF]
712
787
+
His
GTG
[ENA]
¡û
>W1710023181
AVPG01000001
Bacillota
Pontibacillus litoralis JSM 072002 [AVPG]
131469
131394
-
His
GTG
[ENA]
¡û
>W1710054197
BBXV01000031
Bacillota
Oceanobacillus picturae [BBXV]
6818
6743
-
His
GTG
[ENA]
¡û
>W1710511999
FMZB01000007
Bacillota
Terribacillus halophilus [FMZB]
216612
216685
+
His
GTG
[ENA]
¡û
>W1710530407
FNOS01000002
Bacillota
Salimicrobium album [FNOS]
332287
332362
+
His
GTG
[ENA]
¡û
>W1710598572
FTOC01000001
Bacillota
Salimicrobium flavidum [FTOC]
103391
103466
+
His
GTG
[ENA]
¡û
>W1710598998
FTOK01000002
Bacillota
Salimicrobium salexigens [FTOK]
205739
205814
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK