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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266853 (50 seq.)
>W1711082096
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
971008
970933
-
His
GTG
[ENA]
¡û
>W1711307461
MAOS01000089
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
3262
3337
+
His
GTG
[ENA]
¡û
>W1711505719
MKVU01000005
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
220812
220737
-
His
GTG
[ENA]
¡û
>W1712077119
NGUQ01000016
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
24202
24277
+
His
GTG
[ENA]
¡û
>W1712077172
NGUR01000010
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
51687
51612
-
His
GTG
[ENA]
¡û
>C171007353
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
3925953
3926028
+
His
GTG
-
¡û
>W131155721
AQOU01000038
Betaproteobacteria
Pandoraea sp. SD6-2 [AQOU]
39510
39435
-
His
GTG
[ENA]
¡û
>WENV180019175
FTBI01001206
[FTBI] metagenome; soil
4671
4596
-
His
GTG
[ENA]
¢þ
>W141091707
AUZF01000059
Betaproteobacteria
Pandoraea pnomenusa RB-44 [AUZF]
13549
13624
+
His
GTG
[ENA]
¡û
>WENV181308436
OFIS01021264
[OFIS] sludge metagenome; sludge
599
524
-
His
GTG
[ENA]
¢þ
>WENV181312115
OFJB01044279
[OFJB] sludge metagenome; sludge
769
844
+
His
GTG
[ENA]
¢þ
>WENV181401650
OFTX01002122
[OFTX] sludge metagenome; sludge
2980
2905
-
His
GTG
[ENA]
¢þ
>WENV181416071
OGCL01046940
[OGCL] hot springs metagenome; Hot spring water
1104
1179
+
His
GTG
[ENA]
¢þ
>WENV181839459
OGVO01001969
[OGVO] freshwater metagenome; freshwater
543
468
-
His
GTG
[ENA]
¢þ
>WENV181844174
OGVV01016689
[OGVV] freshwater metagenome; freshwater
650
575
-
His
GTG
[ENA]
¢þ
>W141199874
AYXJ01000002
Betaproteobacteria
Pandoraea sp. E26 [AYXJ]
474004
474079
+
His
GTG
[ENA]
¡û
>WENV183666297
ORJL010539054
[ORJL] groundwater metagenome; groundwater
3036
3111
+
His
GTG
[ENA]
¢þ
>WENV170647609
JQIA01040606
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1783
1858
+
His
GTG
[ENA]
¢þ
>WENV170988424
MWVX01487818
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
260
335
+
His
GTG
[ENA]
¢þ
>C181008346
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
531039
531114
+
His
GTG
-
¡û
>C181014182
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
2906005
2906080
+
His
GTG
-
¡û
>C181224200
LT906435
Betaproteobacteria
Pandoraea sputorum NCTC13161 [LT906435]
3229569
3229494
-
His
GTG
-
¡û
>C191072700
CP030849
Betaproteobacteria
Pandoraea sp. XY-2 [CP030849]
2025629
2025704
+
His
GTG
-
¡û
>C191189002
CP041237
Betaproteobacteria
Pandoraea pnomenusa M202 [CP041237]
2088449
2088524
+
His
GTG
-
¡û
>C141010470
CP006900
Betaproteobacteria
Pandoraea pnomenusa 3kgm [CP006900]
3092148
3092073
-
His
GTG
-
¡û
>C141010810
CP006938
Betaproteobacteria
Pandoraea pnomenusa RB-44 [CP006938]
4449593
4449668
+
His
GTG
[Ensembl]
¡û
>W1910810200
MUHY01000001
Betaproteobacteria
Candidatus Pandoraea novymonadis novymonadis E262 [MUHY]
449238
449163
-
His
GTG
[ENA]
¡û
>W1910856336
NBTA01000022
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
195429
195354
-
His
GTG
[ENA]
¡û
>W1810427539
PYYA01000001
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
506836
506911
+
His
GTG
[ENA]
¡û
>C151000931
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
2394980
2394905
-
His
GTG
[Ensembl]
¡û
>C151053911
CP009553
Betaproteobacteria
Pandoraea pnomenusa DSM 16536 [CP009553]
5347058
5347133
+
His
GTG
-
¡û
>C151066420
CP010310
Betaproteobacteria
Pandoraea pulmonicola DSM 16583 [CP010310]
4323241
4323316
+
His
GTG
[Ensembl]
¡û
>C151068687
CP010431
Betaproteobacteria
Pandoraea sputorum DSM 21091 [CP010431]
4197587
4197512
-
His
GTG
[Ensembl]
¡û
>C151073988
CP010897
Betaproteobacteria
Pandoraea vervacti NS15 [CP010897]
2227502
2227577
+
His
GTG
[Ensembl]
¡û
>C151078568
CP011253
Betaproteobacteria
Pandoraea oxalativorans DSM 23570 [CP011253]
4022342
4022417
+
His
GTG
[Ensembl]
¡û
>C151079019
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
3953492
3953567
+
His
GTG
[Ensembl]
¡û
>C151083359
CP011501
Betaproteobacteria
Pandoraea apista AU2161 [CP011501]
2504433
2504508
+
His
GTG
[Ensembl]
¡û
>C151086765
CP011807
Betaproteobacteria
Pandoraea faecigallinarum DSM 23572 [CP011807]
4637435
4637510
+
His
GTG
[Ensembl]
¡û
>W1510100662
CEWL01000028
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
241147
241222
+
His
GTG
[ENA]
¡û
>W1511397444
JTCR01000021
Betaproteobacteria
Pandoraea fibrosis 6399 [JTCR]
11811
11886
+
His
GTG
[ENA]
¡û
>W1511397504
JTCS01000017
Betaproteobacteria
Pandoraea fibrosis 7641 [JTCS]
155811
155736
-
His
GTG
[ENA]
¡û
>W1511480674
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
2326973
2326898
-
His
GTG
[ENA]
¡û
>C161017190
CP007506
Betaproteobacteria
Pandoraea pnomenusa RB38 [CP007506]
2203076
2203151
+
His
GTG
-
¡û
>C161056210
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
5401352
5401277
-
His
GTG
-
¡û
>C161056242
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
481743
481818
+
His
GTG
-
¡û
>C161086528
CP015371
Betaproteobacteria
Pandoraea pnomenusa MCB032 [CP015371]
4722445
4722520
+
His
GTG
[Ensembl]
¡û
>W121102794
AKXS01000034
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
19804
19879
+
His
GTG
[ENA]
¡û
>W1610610081
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
271945
271870
-
His
GTG
[ENA]
¡û
>W1710527982
FNLO01000009
Betaproteobacteria
Chitinasiproducens palmae JS23 [FNLO]
191630
191555
-
His
GTG
[ENA]
¡û
>W1710731426
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
271945
271870
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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