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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266855 (37 seq.)
>W1711307448
MAOS01000061
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
155221
155296
+
Met
CAT
[ENA]
¡û
>W1711505724
MKVU01000006
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
456230
456155
-
Met
CAT
[ENA]
¡û
>W1712077130
NGUQ01000035
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
341234
341159
-
Met
CAT
[ENA]
¡û
>W1712077152
NGUR01000007
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
452286
452361
+
Met
CAT
[ENA]
¡û
>W131155710
AQOU01000027
Betaproteobacteria
Pandoraea sp. SD6-2 [AQOU]
208797
208722
-
Met
CAT
[ENA]
¡û
>C171007358
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
5339587
5339512
-
Met
CAT
-
¡û
>W141091699
AUZF01000040
Betaproteobacteria
Pandoraea pnomenusa RB-44 [AUZF]
89837
89762
-
Met
CAT
[ENA]
¡û
>WENV181401371
OFTX01000055
[OFTX] sludge metagenome; sludge
7531
7606
+
Ile2
CAT
[ENA]
¢þ
>W141199902
AYXJ01000025
Betaproteobacteria
Pandoraea sp. E26 [AYXJ]
97392
97467
+
Met
CAT
[ENA]
¡û
>WENV170651447
JRYF01018250
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
2563
2638
+
Met
CAT
[ENA]
¢þ
>WENV170652889
JRYH01078230
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
104
179
+
Met
CAT
[ENA]
¢þ
>C181008390
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
1944673
1944598
-
Met
CAT
-
¡û
>C181014206
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
4140830
4140755
-
Met
CAT
-
¡û
>C181224153
LT906435
Betaproteobacteria
Pandoraea sputorum NCTC13161 [LT906435]
1786412
1786487
+
Met
CAT
-
¡û
>C191072736
CP030849
Betaproteobacteria
Pandoraea sp. XY-2 [CP030849]
3261726
3261651
-
Met
CAT
-
¡û
>C191189039
CP041237
Betaproteobacteria
Pandoraea pnomenusa M202 [CP041237]
3435039
3434964
-
Met
CAT
-
¡û
>C141010439
CP006900
Betaproteobacteria
Pandoraea pnomenusa 3kgm [CP006900]
1761494
1761569
+
Met
CAT
-
¡û
>C141010847
CP006938
Betaproteobacteria
Pandoraea pnomenusa RB-44 [CP006938]
334840
334765
-
Met
CAT
[Ensembl]
¡û
>W1910810203
MUHY01000001
Betaproteobacteria
Candidatus Pandoraea novymonadis novymonadis E262 [MUHY]
344201
344126
-
Met
CAT
[ENA]
¡û
>W1910856325
NBTA01000017
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
36126
36051
-
Met
CAT
[ENA]
¡û
>W1810427563
PYYA01000016
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
84150
84225
+
Met
CAT
[ENA]
¡û
>C151053941
CP009553
Betaproteobacteria
Pandoraea pnomenusa DSM 16536 [CP009553]
1235674
1235599
-
Met
CAT
-
¡û
>C151066424
CP010310
Betaproteobacteria
Pandoraea pulmonicola DSM 16583 [CP010310]
5724422
5724347
-
Met
CAT
[Ensembl]
¡û
>C151068657
CP010431
Betaproteobacteria
Pandoraea sputorum DSM 21091 [CP010431]
2754430
2754505
+
Met
CAT
[Ensembl]
¡û
>C151074025
CP010897
Betaproteobacteria
Pandoraea vervacti NS15 [CP010897]
3667199
3667124
-
Met
CAT
[Ensembl]
¡û
>C151078573
CP011253
Betaproteobacteria
Pandoraea oxalativorans DSM 23570 [CP011253]
5525286
5525211
-
Met
CAT
[Ensembl]
¡û
>C151079024
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
5367127
5367052
-
Met
CAT
[Ensembl]
¡û
>C151083392
CP011501
Betaproteobacteria
Pandoraea apista AU2161 [CP011501]
3918015
3917940
-
Met
CAT
[Ensembl]
¡û
>C151086801
CP011807
Betaproteobacteria
Pandoraea faecigallinarum DSM 23572 [CP011807]
658031
657956
-
Met
CAT
[Ensembl]
¡û
>W1510100679
CEWL01000037
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
36157
36082
-
Met
CAT
[ENA]
¡û
>W1511397442
JTCR01000020
Betaproteobacteria
Pandoraea fibrosis 6399 [JTCR]
15923
15998
+
Met
CAT
[ENA]
¡û
>W1511397487
JTCS01000014
Betaproteobacteria
Pandoraea fibrosis 7641 [JTCS]
15923
15998
+
Met
CAT
[ENA]
¡û
>C161017227
CP007506
Betaproteobacteria
Pandoraea pnomenusa RB38 [CP007506]
3426665
3426590
-
Met
CAT
-
¡û
>C161056191
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
3608336
3608411
+
Met
CAT
-
¡û
>C161056288
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
1663473
1663398
-
Met
CAT
-
¡û
>C161086565
CP015371
Betaproteobacteria
Pandoraea pnomenusa MCB032 [CP015371]
569878
569803
-
Met
CAT
[Ensembl]
¡û
>W121102845
AKXS01000311
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
1466
1391
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK