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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266896 (78 seq.)
>W1710784136
LJGS01000041
Actinomycetota
Streptomyces abyssalis [LJGS]
122262
122189
-
Asn
GTT
[ENA]
¡û
>W1710784201
LJGT01000040
Actinomycetota
Streptomyces abyssalis [LJGT]
648627
648554
-
Asn
GTT
[ENA]
¡û
>W1710784322
LJGV01000022
Actinomycetota
Streptomyces qinglanensis [LJGV]
1141903
1141830
-
Asn
GTT
[ENA]
¡û
>W1710784346
LJGW01000157
Actinomycetota
Streptomyces nanshensis [LJGW]
25317
25392
+
Asn
GTT
[ENA]
¡û
>W1710784416
LJGX01000825
Actinomycetota
Streptomyces nanshensis [LJGX]
335
262
-
Asn
GTT
[ENA]
¡û
>W1711183491
LWLB01000012
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
127741
127668
-
Asn
GTT
[ENA]
¡û
>W1711183492
LWLB01000012
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
125409
125336
-
Asn
GTT
[ENA]
¡û
>W1711346016
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
914856
914929
+
Asn
GTT
[ENA]
¡û
>W1711346017
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
917380
917453
+
Asn
GTT
[ENA]
¡û
>W1711491864
MKJY01000033
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
40275
40348
+
Asn
GTT
[ENA]
¡û
>W1711724816
MTQN01000007
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
332465
332390
-
Asn
GTT
[ENA]
¡û
>W1711738929
MUBL01000754
Actinomycetota
Streptomyces cacaoi subsp. cacaoi [MUBL]
327
254
-
Asn
GTT
[ENA]
¡û
>W131053543
ANAD01000161
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
6295
6368
+
Asn
GTT
[ENA]
¡û
>W131053608
ANAE01000178
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
6247
6174
-
Asn
GTT
[ENA]
¡û
>W131053609
ANAE01000178
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
5951
5878
-
Asn
GTT
[ENA]
¡û
>W131054795
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
718673
718600
-
Asn
GTT
[ENA]
¡û
>W131054796
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
718384
718311
-
Asn
GTT
[ENA]
¡û
>W131054933
ANBC01000466
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
1122
1197
+
Asn
GTT
[ENA]
¡û
>W131054934
ANBC01000466
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
1539
1614
+
Asn
GTT
[ENA]
¡û
>W131055203
ANBH01000163
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
23160
23087
-
Asn
GTT
[ENA]
¡û
>W131227015
AUEV01000003
Actinomycetota
Streptomyces sp. TAA486 [AUEV]
231119
231194
+
Asn
GTT
[ENA]
¡û
>W131234124
AUKN01000017
Actinomycetota
Streptomyces sp. CNT318 [AUKN]
121102
121029
-
Asn
GTT
[ENA]
¡û
>W131234168
AUKO01000010
Actinomycetota
Streptomyces sp. CNT360 [AUKO]
71561
71488
-
Asn
GTT
[ENA]
¡û
>W131234614
AUKW01000018
Actinomycetota
Streptomyces sp. TAA204 [AUKW]
121490
121417
-
Asn
GTT
[ENA]
¡û
>W141140090
AWOO02000048
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
35836
35763
-
Asn
GTT
[ENA]
¡û
>W141219681
AZXF01000012
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
184848
184923
+
Asn
GTT
[ENA]
¡û
>W141219682
AZXF01000012
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
185242
185317
+
Asn
GTT
[ENA]
¡û
>W141236315
BAZE01000001
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
555565
555492
-
Asn
GTT
[ENA]
¡û
>W141236316
BAZE01000001
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
555330
555257
-
Asn
GTT
[ENA]
¡û
>WENV183748792
PPFU01081941
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2495
2570
+
Asn
GTT
[ENA]
¢þ
>WENV183750290
PPFU01282508
[PPFU] hypolithon metagenome; Antarctic Hypolithon
614
687
+
Asn
GTT
[ENA]
¢þ
>C181072228
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
4442046
4441973
-
Asn
GTT
-
¡û
>C191151526
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
1821023
1821096
+
Asn
GTT
-
¡û
>C191212897
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
5847547
5847620
+
Asn
GTT
-
¡û
>C191212898
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
5847786
5847859
+
Asn
GTT
-
¡û
>W141755740
JNWT01000008
Actinomycetota
Streptomyces graminis [JNWT]
84921
84846
-
Asn
GTT
[ENA]
¡û
>W141765944
JODR01000004
Actinomycetota
Streptomyces albus subsp. albus [JODR]
203891
203966
+
Asn
GTT
[ENA]
¡û
>W141766433
JODZ01000001
Actinomycetota
Streptomyces albus subsp. albus [JODZ]
226612
226687
+
Asn
GTT
[ENA]
¡û
>W141769924
JOGD01000022
Actinomycetota
Streptomyces sp. NRRL S-1868 [JOGD]
89867
89794
-
Asn
GTT
[ENA]
¡û
>W141772143
JOHQ01000007
Actinomycetota
Streptomyces sp. NRRL F-5917 [JOHQ]
106293
106218
-
Asn
GTT
[ENA]
¡û
>W141772359
JOHT01000014
Actinomycetota
Streptomyces sp. NRRL F-5053 [JOHT]
90322
90249
-
Asn
GTT
[ENA]
¡û
>W1910181970
BJMM01000018
Actinomycetota
Streptomyces cacaoi subsp. cacaoi NBRC 12748 [BJMM]
36764
36837
+
Asn
GTT
[ENA]
¡û
>W1910547224
FZNP01000006
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
6895
6822
-
Asn
GTT
[ENA]
¡û
>W1910572896
JNNY01000012
Actinomycetota
Streptomyces qinglanensis 172205 [JNNY]
69399
69472
+
Asn
GTT
[ENA]
¡û
>W1810073110
PEFS01000001
Actinomycetota
Streptomyces sp. CNZ279 [PEFS]
2454863
2454936
+
Asn
GTT
[ENA]
¡û
>W1810400351
PYGA01000020
Actinomycetota
Murinocardiopsis flavida DSM 45312 [PYGA]
114415
114488
+
Asn
GTT
[ENA]
¡û
>W1810608283
QGTF01000001
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
125215
125142
-
Asn
GTT
[ENA]
¡û
>W1810608284
QGTF01000001
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
124920
124847
-
Asn
GTT
[ENA]
¡û
>W1810694243
QLLX01000002
Actinomycetota
Streptomyces sp. Amel2xB2 [QLLX]
662199
662126
-
Asn
GTT
[ENA]
¡û
>W1810735408
QOIM01000042
Actinomycetota
Streptomyces reniochalinae LHW50302 [QOIM]
403379
403306
-
Asn
GTT
[ENA]
¡û
>W1810735440
QOIN01000040
Actinomycetota
Streptomyces diacarni philanthi LHW51701 [QOIN]
79912
79985
+
Asn
GTT
[ENA]
¡û
>W1810861271
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
5385739
5385812
+
Asn
GTT
[ENA]
¡û
>W1510014805
BBQG01000016
Actinomycetota
Streptomyces albus NBRC 13014 [BBQG]
79337
79262
-
Asn
GTT
[ENA]
¡û
>C10107980
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
2629480
2629405
-
Asn
GTT
[Ensembl]
¡û
>W1510456350
CPWZ01000097
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
7182
7107
-
Asn
GTT
[ENA]
¡û
>W1511352755
JROO01000022
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
32398
32325
-
Asn
GTT
[ENA]
¡û
>W1511697685
LGEC01000059
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
84359
84286
-
Asn
GTT
[ENA]
¡û
>W1511697686
LGEC01000059
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
84193
84120
-
Asn
GTT
[ENA]
¡û
>W121104670
ALAP01000037
Actinomycetota
Streptomyces sp. AA1529 [ALAP]
63446
63519
+
Asn
GTT
[ENA]
¡û
>W1610067587
BCQR01000080
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
19015
19088
+
Asn
GTT
[ENA]
¡û
>W1610068729
BCRO01000028
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
61671
61598
-
Asn
GTT
[ENA]
¡û
>W1610069198
BCSH01000019
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
25893
25820
-
Asn
GTT
[ENA]
¡û
>W1610069199
BCSH01000019
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
25762
25689
-
Asn
GTT
[ENA]
¡û
>W1610615036
LGKH01003335
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
280458
280533
+
Asn
GTT
[ENA]
¡û
>W1610632065
LIPO01000440
Actinomycetota
Streptomyces albus almquistii [LIPO]
12877
12802
-
Asn
GTT
[ENA]
¡û
>W1610632534
LIPX01000010
Actinomycetota
Streptomyces sp. WMMB 322 [LIPX]
106416
106341
-
Asn
GTT
[ENA]
¡û
>W1610633251
LIQO01000489
Actinomycetota
Streptomyces albus flocculus [LIQO]
116
41
-
Asn
GTT
[ENA]
¡û
>W1710064960
BCQR01000080
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
19015
19088
+
Asn
GTT
[ENA]
¡û
>W1710066102
BCRO01000028
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
61671
61598
-
Asn
GTT
[ENA]
¡û
>W1710066571
BCSH01000019
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
25893
25820
-
Asn
GTT
[ENA]
¡û
>W1710066572
BCSH01000019
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
25762
25689
-
Asn
GTT
[ENA]
¡û
>W1710503730
FMHJ01000003
Actinomycetota
Streptomyces sp. WMMB 714 [FMHJ]
236851
236924
+
Asn
GTT
[ENA]
¡û
>W1710552014
FOGO01000001
Actinomycetota
Streptomyces qinglanensis [FOGO]
842563
842636
+
Asn
GTT
[ENA]
¡û
>W1710570633
FOVH01000001
Actinomycetota
Actinomadura madurae [FOVH]
478877
478950
+
Asn
GTT
[ENA]
¡û
>W1710736282
LGKH01003335
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
280458
280533
+
Asn
GTT
[ENA]
¡û
>W1710766451
LIPO01000440
Actinomycetota
Streptomyces albus almquistii [LIPO]
12877
12802
-
Asn
GTT
[ENA]
¡û
>W1710766920
LIPX01000010
Actinomycetota
Streptomyces sp. WMMB 322 [LIPX]
106416
106341
-
Asn
GTT
[ENA]
¡û
>W1710767683
LIQO01000489
Actinomycetota
Streptomyces albus flocculus [LIQO]
116
41
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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