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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266918 (41 seq.)
>W1711093372
LTEY01000009
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
325606
325679
+
Gly
GCC
[ENA]
¡û
>W1711281828
LZMM01000058
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
29219
29146
-
Gly
GCC
[ENA]
¡û
>C019395
CP000386
Actinomycetota
Rubrobacter xylanophilus DSM 9941 [CP000386]
1324076
1324148
+
Gly
GCC
[Ensembl]
¡û
>WENV180067744
MPLZ02011898
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
5
80
+
Gly
GCC
[ENA]
¢þ
>WENV180067797
MPLZ02014522
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
11519
11594
+
Gly
GCC
[ENA]
¢þ
>WENV180068125
MPLZ02032078
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
36695
36620
-
Gly
GCC
[ENA]
¢þ
>WENV180068833
MPLZ02070269
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
1248
1173
-
Gly
GCC
[ENA]
¢þ
>C08005775
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
1285249
1285176
-
Gly
GCC
[Ensembl]
¡û
>WENV183748182
PPFU01017167
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3
76
+
Gly
GCC
[ENA]
¢þ
>WENV170175786
CEOS01007794
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2859
2784
-
Gly
GCC
[ENA]
¢þ
>WENV170228840
CEQG01046544
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
609
534
-
Gly
GCC
[ENA]
¢þ
>WENV170378327
CETV01012788
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
177
102
-
Gly
GCC
[ENA]
¢þ
>C181055933
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
542216
542289
+
Gly
GCC
-
¡û
>C181187322
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
1418613
1418540
-
Gly
GCC
-
¡û
>C191144225
CP035504
Actinomycetota
Kocuria indica CE7 [CP035504]
1317220
1317147
-
Gly
GCC
-
¡û
>C191210990
LR134409
Actinomycetota
Kocuria rhizophila NCTC8340 [LR134409]
1534869
1534942
+
Gly
GCC
-
¡û
>W09101179
AAEB02000008
Actinomycetota
Rubrobacter xylanophilus DSM 9941 [AAEB]
47353
47280
-
Gly
GCC
[ENA]
¡û
>W1910183606
BJNW01000005
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
87139
87212
+
Gly
GCC
[ENA]
¡û
>W1910471642
FXBD01000011
Actinomycetota
Kocuria marina [FXBD]
28898
28825
-
Gly
GCC
[ENA]
¡û
>W1910827520
MWSL01000022
Actinomycetota
Kocuria indica DSM 25126 [MWSL]
1682
1609
-
Gly
GCC
[ENA]
¡û
>W1911114672
NOIT01000001
Actinomycetota
Kocuria carniphila CCM 132 [NOIT]
279191
279264
+
Gly
GCC
[ENA]
¡û
>W1911149940
NPGE01000001
Actinomycetota
Kocuria varians 80 [NPGE]
1806911
1806984
+
Gly
GCC
[ENA]
¡û
>W1911243208
NSGI01000007
Actinomycetota
Kocuria sp. WRN011 [NSGI]
67485
67558
+
Gly
GCC
[ENA]
¡û
>W1911582749
PHOA01000071
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
5172
5245
+
Gly
GCC
[ENA]
¡û
>W1810189412
PKJA01000001
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
1830653
1830580
-
Gly
GCC
[ENA]
¡û
>W1810197060
PNJG01000031
Actinomycetota
Kocuria tytonis 442 [PNJG]
15143
15216
+
Gly
GCC
[ENA]
¡û
>W1810200208
PNRK01000018
Actinomycetota
Kocuria rhizophila D2 [PNRK]
37063
37136
+
Gly
GCC
[ENA]
¡û
>W1511317250
JPWX01000790
Actinomycetota
Kocuria rhizophila RF [JPWX]
373
300
-
Gly
GCC
[ENA]
¡û
>W1511352693
JROM01000016
Actinomycetota
Kocuria marina SO9-6 [JROM]
445104
445177
+
Gly
GCC
[ENA]
¡û
>W1511489652
JWTC01000009
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
260449
260522
+
Gly
GCC
[ENA]
¡û
>W1511681645
LFIY01000018
Actinomycetota
Kocuria rhizophila 14ASP [LFIY]
25311
25384
+
Gly
GCC
[ENA]
¡û
>W11163675
AFID01000001
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
170838
170765
-
Gly
GCC
[ENA]
¡û
>W121070984
AJXN01000089
Actinomycetota
Kocuria atrinae C3-8 [AJXN]
21414
21341
-
Gly
GCC
[ENA]
¡û
>W1610112358
CZJU01000115
Actinomycetota
Kocuria salsicia [CZJU]
6009
5936
-
Gly
GCC
[ENA]
¡û
>W1610112435
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
144592
144519
-
Gly
GCC
[ENA]
¡û
>W1610112490
CZJX01000057
Actinomycetota
Kocuria varians [CZJX]
10583
10656
+
Gly
GCC
[ENA]
¡û
>W1611041113
LZMM01000058
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
29219
29146
-
Gly
GCC
[ENA]
¡û
>W1710115062
CZJU01000115
Actinomycetota
Kocuria salsicia [CZJU]
6009
5936
-
Gly
GCC
[ENA]
¡û
>W1710115139
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
144592
144519
-
Gly
GCC
[ENA]
¡û
>W1710115194
CZJX01000057
Actinomycetota
Kocuria varians [CZJX]
10583
10656
+
Gly
GCC
[ENA]
¡û
>W1710607488
FXAC01000022
Actinomycetota
Kocuria indica [FXAC]
1682
1609
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK