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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267304 (139 seq.)
>W1710786458
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1485
1560
+
His
GTG
[ENA]
¡û
>W1710876948
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
490
417
-
His
GTG
[ENA]
¡û
>W1710877106
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76660
76733
+
His
GTG
[ENA]
¡û
>W1710877123
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
439
514
+
His
GTG
[ENA]
¡û
>W1710909382
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1277
1350
+
His
GTG
[ENA]
¡û
>W1711018674
LQXD01000006
Bacillota
Anaerobacillus isosaccharinicus NB2006 [LQXD]
1661
1736
+
His
GTG
[ENA]
¡û
>W1711018686
LQXD01000007
Bacillota
Anaerobacillus isosaccharinicus NB2006 [LQXD]
1137
1212
+
His
GTG
[ENA]
¡û
>W1711116963
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
464
539
+
His
GTG
[ENA]
¡û
>W1711116993
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774294
774221
-
His
GTG
[ENA]
¡û
>W1711166804
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982800
1982727
-
His
GTG
[ENA]
¡û
>W131216020
ATVM01000008
Bacillota
Marinococcus halotolerans DSM 16375 [ATVM]
101931
101856
-
His
GTG
[ENA]
¡û
>W131241565
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928285
928212
-
His
GTG
[ENA]
¡û
>W1711603298
MOLV01000045
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
563
490
-
His
GTG
[ENA]
¡û
>W1711603307
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
884
809
-
His
GTG
[ENA]
¡û
>W1711632640
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
887
960
+
His
GTG
[ENA]
¡û
>W1711632684
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
642
567
-
His
GTG
[ENA]
¡û
>W1711699535
MSLR01000045
Bacillota
Alkalihalophilus pseudofirmus [MSLR]
1562
1637
+
His
GTG
[ENA]
¡û
>W1711719945
MTIP01000008
Bacillota
Alkalihalobacterium alkalinitrilicum alkalinitrilicus [MTIP]
982058
981983
-
His
GTG
[ENA]
¡û
>W1711720764
MTIX01000001
Bacillota
Shouchella patagoniensis [MTIX]
1137
1212
+
His
GTG
[ENA]
¡û
>W1711720825
MTIX01000002
Bacillota
Shouchella patagoniensis [MTIX]
434648
434573
-
His
GTG
[ENA]
¡û
>W1712017228
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
767
840
+
His
GTG
[ENA]
¡û
>W1712017333
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
707
632
-
His
GTG
[ENA]
¡û
>W131223938
AUCK01000029
Bacillota
Alkalicoccus chagannorensis DSM 18086 [AUCK]
48165
48090
-
His
GTG
[ENA]
¡û
>C171040520
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
461981
462056
+
His
GTG
-
¡û
>C171040556
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162757
1162830
+
His
GTG
-
¡û
>C171072095
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34847
34922
+
His
GTG
-
¡û
>C171072137
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
724109
724182
+
His
GTG
-
¡û
>WENV180101159
OAOU01002585
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
133
58
-
His
GTG
[ENA]
¢þ
>w003663
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
1903
1980
+
His
GTG
[ENA]
¡û
>w003638
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279536
279459
-
His
GTG
[ENA]
¡û
>W08005498
ABHZ01000006
Bacillota
Salisediminibacterium selenitireducens MLS10 [ABHZ]
1651
1726
+
His
GTG
[ENA]
¡û
>W08005519
ABHZ01000008
Bacillota
Salisediminibacterium selenitireducens MLS10 [ABHZ]
209364
209292
-
His
GTG
[ENA]
¡û
>W141215218
AZUC01000019
Bacillota
Sporosarcina sp. D27 [AZUC]
1429
1504
+
His
GTG
[ENA]
¡û
>W141231933
BAUT01000004
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAUT]
37994
38069
+
His
GTG
[ENA]
¡û
>W141231975
BAUT01000074
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAUT]
693
768
+
His
GTG
[ENA]
¡û
>W141231994
BAUT01000107
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAUT]
8772
8697
-
His
GTG
[ENA]
¡û
>W141233635
BAWA01000005
Bacillota
Bacillus sp. JCM 19045 [BAWA]
33501
33576
+
His
GTG
[ENA]
¡û
>W141233648
BAWA01000006
Bacillota
Bacillus sp. JCM 19045 [BAWA]
1328
1403
+
His
GTG
[ENA]
¡û
>W141233730
BAWB01000093
Bacillota
Bacillus sp. JCM 19046 [BAWB]
481
556
+
His
GTG
[ENA]
¡û
>C08004774
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
34936
35011
+
His
GTG
[Ensembl]
¡û
>C08004810
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704704
704777
+
His
GTG
[Ensembl]
¡û
>C181171335
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
1533239
1533314
+
His
GTG
-
¡û
>C181171381
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
3196866
3196791
-
His
GTG
-
¡û
>C181171382
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
3196745
3196670
-
His
GTG
-
¡û
>W141563071
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2090162
2090089
-
His
GTG
[ENA]
¡û
>W141563218
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
748
673
-
His
GTG
[ENA]
¡û
>W141563251
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001212
1001139
-
His
GTG
[ENA]
¡û
>W141701494
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1439644
1439719
+
His
GTG
[ENA]
¡û
>W141701546
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
239526
239599
+
His
GTG
[ENA]
¡û
>W141730917
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
283166
283239
+
His
GTG
[ENA]
¡û
>W141730933
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754448
2754523
+
His
GTG
[ENA]
¡û
>W141730983
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1600577
1600652
+
His
GTG
[ENA]
¡û
>W141731019
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287515
2287588
+
His
GTG
[ENA]
¡û
>W1910438059
FVZD01000006
Bacillota
Marinococcus halophilus Marseille-P3459 [FVZD]
1884791
1884716
-
His
GTG
[ENA]
¡û
>C141009940
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677981
678054
+
His
GTG
[Ensembl]
¡û
>C141009956
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3164111
3164186
+
His
GTG
[Ensembl]
¡û
>W1910930181
NISN01000002
Bacillota
Bacillus sp. FJAT-45037 [NISN]
242083
242158
+
His
GTG
[ENA]
¡û
>W1910930190
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
351390
351465
+
His
GTG
[ENA]
¡û
>W1910930242
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
1440180
1440105
-
His
GTG
[ENA]
¡û
>W1910940821
NJAW01000008
Bacillota
Salipaludibacillus neizhouensis DSM 19794 [NJAW]
1471754
1471679
-
His
GTG
[ENA]
¡û
>W1910940861
NJAW01000025
Bacillota
Salipaludibacillus neizhouensis DSM 19794 [NJAW]
76390
76465
+
His
GTG
[ENA]
¡û
>W1910940958
NJAX01000021
Bacillota
Bacillus solitudinis FJAT-45086 [NJAX]
38686
38761
+
His
GTG
[ENA]
¡û
>W1910940967
NJAX01000024
Bacillota
Bacillus solitudinis FJAT-45086 [NJAX]
103881
103956
+
His
GTG
[ENA]
¡û
>W1911148680
NPFA01000003
Bacillota
Marinococcus halophilus KCTC 2843 [NPFA]
80558
80483
-
His
GTG
[ENA]
¡û
>W1911577455
PDOE01000014
Bacillota
Salipaludibacillus neizhouensis KCTC 13187 [PDOE]
1415
1490
+
His
GTG
[ENA]
¡û
>W1911577479
PDOE01000026
Bacillota
Salipaludibacillus neizhouensis KCTC 13187 [PDOE]
30232
30157
-
His
GTG
[ENA]
¡û
>W1911770658
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
743
816
+
His
GTG
[ENA]
¡û
>W1911770702
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
648
573
-
His
GTG
[ENA]
¡û
>W1810057811
PDIZ01000001
Bacillota
Bacillus sp. es.036 [PDIZ]
2031094
2031019
-
His
GTG
[ENA]
¡û
>W1810057861
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
386043
386118
+
His
GTG
[ENA]
¡û
>W1810062473
PDOD01000001
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
1333
1408
+
His
GTG
[ENA]
¡û
>W1810062491
PDOD01000002
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
1052854
1052779
-
His
GTG
[ENA]
¡û
>W1810357473
PVNS01000013
Bacillota
Alkalicoccus urumqiensis BZ-SZ-XJ18 [PVNS]
91279
91204
-
His
GTG
[ENA]
¡û
>W1810357490
PVNS01000020
Bacillota
Alkalicoccus urumqiensis BZ-SZ-XJ18 [PVNS]
29494
29419
-
His
GTG
[ENA]
¡û
>W1810443992
PZJJ01000011
Bacillota
Alkalicoccus saliphilus 6AG [PZJJ]
100157
100082
-
His
GTG
[ENA]
¡û
>W1810444022
PZJJ01000036
Bacillota
Alkalicoccus saliphilus 6AG [PZJJ]
23744
23669
-
His
GTG
[ENA]
¡û
>W1810760524
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1892880
1892807
-
His
GTG
[ENA]
¡û
>W1810760565
QPKF01000017
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
400
475
+
His
GTG
[ENA]
¡û
>W1810760975
QPKS01000003
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
265665
265591
-
His
GTG
[ENA]
¡û
>W1810762673
QQAK01000017
Bacillota
Sporosarcina sp. BI001-red [QQAK]
1534
1608
+
His
GTG
[ENA]
¡û
>C10102151
CP001791
Bacillota
[Bacillus] selenitireducens MLS10 [CP001791]
1370490
1370565
+
His
GTG
[Ensembl]
¡û
>C10102177
CP001791
Bacillota
[Bacillus] selenitireducens MLS10 [CP001791]
2935982
2935907
-
His
GTG
[Ensembl]
¡û
>W1511347529
JRJU01000019
Bacillota
Halalkalibacter okhensis Kh10-101 [JRJU]
13926
13853
-
His
GTG
[ENA]
¡û
>W1511347603
JRJU01000053
Bacillota
Halalkalibacter okhensis Kh10-101 [JRJU]
22337
22262
-
His
GTG
[ENA]
¡û
>W1511347624
JRJU01000055
Bacillota
Halalkalibacter okhensis Kh10-101 [JRJU]
977
1052
+
His
GTG
[ENA]
¡û
>W1511403389
JTLB01000042
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
727
652
-
His
GTG
[ENA]
¡û
>W1511403834
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
663
588
-
His
GTG
[ENA]
¡û
>W1511657519
LELK01000001
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
42435
42510
+
His
GTG
[ENA]
¡û
>W1511657559
LELK01000005
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
1775
1850
+
His
GTG
[ENA]
¡û
>W1511686078
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40843
40770
-
His
GTG
[ENA]
¡û
>W1511686118
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
356
431
+
His
GTG
[ENA]
¡û
>W1511699989
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
719
792
+
His
GTG
[ENA]
¡û
>W1610041688
BAXC01000116
Bacillota
Bacillus sp. JCM 19041 [BAXC]
843
918
+
His
GTG
[ENA]
¡û
>W1610042222
BAXP01000008
Bacillota
Bacillus sp. JCM 19035 [BAXP]
1162
1237
+
His
GTG
[ENA]
¡û
>W1610042236
BAXP01000012
Bacillota
Bacillus sp. JCM 19035 [BAXP]
79832
79907
+
His
GTG
[ENA]
¡û
>W1610042989
BAZN01000004
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAZN]
37994
38069
+
His
GTG
[ENA]
¡û
>W1610043031
BAZN01000074
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAZN]
693
768
+
His
GTG
[ENA]
¡û
>W1610043050
BAZN01000107
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAZN]
8772
8697
-
His
GTG
[ENA]
¡û
>W1610043200
BAZQ01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
144005
144080
+
His
GTG
[ENA]
¡û
>W1610043219
BAZQ01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
698
771
+
His
GTG
[ENA]
¡û
>W1610043255
BAZQ01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
19139
19064
-
His
GTG
[ENA]
¡û
>W1610043271
BAZQ01000071
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
10755
10830
+
His
GTG
[ENA]
¡û
>W121087096
AKKV01000024
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
343665
343590
-
His
GTG
[ENA]
¡û
>W121087109
AKKV01000026
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
19329
19254
-
His
GTG
[ENA]
¡û
>C131001791
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
34845
34920
+
His
GTG
[Ensembl]
¡û
>C131001823
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
663055
663128
+
His
GTG
[Ensembl]
¡û
>W1610589630
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
974
1047
+
His
GTG
[ENA]
¡û
>W1610589643
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
661
586
-
His
GTG
[ENA]
¡û
>W1610589661
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
761
834
+
His
GTG
[ENA]
¡û
>W1610589702
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
356
431
+
His
GTG
[ENA]
¡û
>W1610650313
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1485
1560
+
His
GTG
[ENA]
¡û
>W1610739294
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
490
417
-
His
GTG
[ENA]
¡û
>W1610739452
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76660
76733
+
His
GTG
[ENA]
¡û
>W1610739469
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
439
514
+
His
GTG
[ENA]
¡û
>W1610767741
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1277
1350
+
His
GTG
[ENA]
¡û
>W1610928322
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
464
539
+
His
GTG
[ENA]
¡û
>W1610928352
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774294
774221
-
His
GTG
[ENA]
¡û
>W1610977344
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982800
1982727
-
His
GTG
[ENA]
¡û
>W1710038782
BAXC01000116
Bacillota
Bacillus sp. JCM 19041 [BAXC]
843
918
+
His
GTG
[ENA]
¡û
>W1710039316
BAXP01000008
Bacillota
Bacillus sp. JCM 19035 [BAXP]
1162
1237
+
His
GTG
[ENA]
¡û
>W1710039330
BAXP01000012
Bacillota
Bacillus sp. JCM 19035 [BAXP]
79832
79907
+
His
GTG
[ENA]
¡û
>W1710040149
BAZN01000004
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAZN]
37994
38069
+
His
GTG
[ENA]
¡û
>W1710040191
BAZN01000074
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAZN]
693
768
+
His
GTG
[ENA]
¡û
>W1710040210
BAZN01000107
Bacillota
Halalkalibacter wakoensis JCM 9140 [BAZN]
8772
8697
-
His
GTG
[ENA]
¡û
>W1710040360
BAZQ01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
144005
144080
+
His
GTG
[ENA]
¡û
>W1710040379
BAZQ01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
698
771
+
His
GTG
[ENA]
¡û
>W1710040415
BAZQ01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
19139
19064
-
His
GTG
[ENA]
¡û
>W1710040431
BAZQ01000071
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
10755
10830
+
His
GTG
[ENA]
¡û
>W1710511217
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1277
1350
+
His
GTG
[ENA]
¡û
>W1710524087
FNIL01000007
Bacillota
Alkalicoccus daliensis [FNIL]
742
817
+
His
GTG
[ENA]
¡û
>W1710524104
FNIL01000010
Bacillota
Alkalicoccus daliensis [FNIL]
1334
1409
+
His
GTG
[ENA]
¡û
>W1710528297
FNNC01000001
Bacillota
Marinococcus luteus [FNNC]
898433
898358
-
His
GTG
[ENA]
¡û
>W1710552593
FOGY01000005
Bacillota
Psychrobacillus sp. OK032 [FOGY]
329759
329684
-
His
GTG
[ENA]
¡û
>W1710552594
FOGY01000005
Bacillota
Psychrobacillus sp. OK032 [FOGY]
329645
329570
-
His
GTG
[ENA]
¡û
>W1710569585
FOUN01000016
Bacillota
Psychrobacillus psychrodurans [FOUN]
1622
1697
+
His
GTG
[ENA]
¡û
>W1710708910
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
974
1047
+
His
GTG
[ENA]
¡û
>W1710708923
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
661
586
-
His
GTG
[ENA]
¡û
>W1710708941
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
761
834
+
His
GTG
[ENA]
¡û
>W1710708982
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
356
431
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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