This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267306 (27 seq.)
>W1711143155
LVHD01000062
Alphaproteobacteria
Acetobacter malorum [LVHD]
3946
3871
-
Glu
CTC
[ENA]
¡û
>W141082088
ATSX01000007
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
21647
21722
+
Glu
TTC
[ENA]
¡û
>W141082089
ATSX01000007
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
21798
21873
+
Glu
TTC
[ENA]
¡û
>WENV170669384
LAHS01000063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
49818
49743
-
Glu
CTC
[ENA]
¢þ
>C191023993
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
627123
627048
-
Glu
CTC
-
¡û
>C191150966
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2678033
2678108
+
Glu
CTC
-
¡û
>C191157797
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
540496
540571
+
Glu
TTC
-
¡û
>W1910008301
BDEY01000075
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
26925
27000
+
Glu
TTC
[ENA]
¡û
>W1910008304
BDEY01000078
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
44090
44165
+
Glu
TTC
[ENA]
¡û
>W1910182343
BJMU01000021
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
26988
27063
+
Glu
CTC
[ENA]
¡û
>W1910182371
BJMV01000005
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
49933
49858
-
Glu
CTC
[ENA]
¡û
>W1910972017
NKCY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
499697
499622
-
Glu
CTC
[ENA]
¡û
>W1910972038
NKCY01000004
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
341508
341433
-
Glu
TTC
[ENA]
¡û
>W1910990471
NKTY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
57508
57433
-
Glu
CTC
[ENA]
¡û
>W1911138382
NOXG01000002
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
83635
83710
+
Glu
CTC
[ENA]
¡û
>W1911138395
NOXG01000004
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
101745
101670
-
Glu
TTC
[ENA]
¡û
>W1911410447
NWTP01000010
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
70323
70398
+
Glu
CTC
[ENA]
¡û
>C151091064
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
374582
374657
+
Glu
TTC
[Ensembl]
¡û
>C151091066
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
475370
475445
+
Glu
TTC
[Ensembl]
¡û
>W11179028
AGFR01000012
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
111852
111927
+
Glu
TTC
[ENA]
¡û
>W11179029
AGFR01000012
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
112002
112077
+
Glu
TTC
[ENA]
¡û
>W1610040899
BAMY01000067
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
4266
4191
-
Glu
CTC
[ENA]
¡û
>W1610624933
LHZV01000040
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
4262
4187
-
Glu
CTC
[ENA]
¡û
>W1610954163
LVHD01000062
Alphaproteobacteria
Acetobacter malorum [LVHD]
3946
3871
-
Glu
CTC
[ENA]
¡û
>W1710038097
BAMY01000067
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
4266
4191
-
Glu
CTC
[ENA]
¡û
>W1710624760
JOPG01000007
Alphaproteobacteria
Acetobacter malorum [JOPG]
63049
62974
-
Glu
CTC
[ENA]
¡û
>W1710756051
LHZV01000040
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
4262
4187
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK