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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267435 (28 seq.)
>W1710996587
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
987891
987966
+
Asn
GTT
[ENA]
¡û
>W1711585452
MNZS01000037
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
485
410
-
Asn
GTT
[ENA]
¡û
>C021977
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2596203
2596278
+
Asn
GTT
[Ensembl]
¡û
>C021979
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2596407
2596482
+
Asn
GTT
[Ensembl]
¡û
>WENV180585259
OCOK01072782
[OCOK] marine metagenome; ENVO:00002010
89
14
-
Asn
GTT
[ENA]
¢þ
>WENV182545150
OJBM01000355
[OJBM] seawater metagenome; Sea water
5510
5435
-
Asn
GTT
[ENA]
¢þ
>WENV170779586
LZQQ01000070
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
15554
15629
+
Asn
GTT
[ENA]
¢þ
>WENV170779715
LZQR01000042
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
20018
20093
+
Asn
GTT
[ENA]
¢þ
>C191011672
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2280585
2280510
-
Asn
GTT
-
¡û
>C191134025
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
705754
705829
+
Asn
GTT
-
¡û
>C191173225
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4343595
4343520
-
Asn
GTT
-
¡û
>C191173227
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4343392
4343317
-
Asn
GTT
-
¡û
>C191173228
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4343283
4343208
-
Asn
GTT
-
¡û
>C191185859
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2485235
2485310
+
Asn
GTT
-
¡û
>C191185861
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2485438
2485513
+
Asn
GTT
-
¡û
>C191185862
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2485547
2485622
+
Asn
GTT
-
¡û
>W09103134
AAIV01000034
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
819
894
+
Asn
GTT
[ENA]
¡û
>W09103136
AAIV01000034
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
1023
1098
+
Asn
GTT
[ENA]
¡û
>W141776944
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
2539805
2539880
+
Asn
GTT
[ENA]
¡û
>W141820258
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
572955
573030
+
Asn
GTT
[ENA]
¡û
>W1810154361
PIZK01000039
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
28336
28411
+
Asn
GTT
[ENA]
¡û
>W1810154362
PIZK01000039
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
28451
28526
+
Asn
GTT
[ENA]
¡û
>W1810154363
PIZK01000039
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
28582
28657
+
Asn
GTT
[ENA]
¡û
>W1810154364
PIZK01000039
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
28695
28770
+
Asn
GTT
[ENA]
¡û
>W1810157767
PJCD01000003
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
1001382
1001307
-
Asn
GTT
[ENA]
¡û
>W1810157769
PJCD01000003
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
1001178
1001103
-
Asn
GTT
[ENA]
¡û
>W1810185528
PKGB01000001
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
169698
169773
+
Asn
GTT
[ENA]
¡û
>W1610851244
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
987891
987966
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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