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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267741 (89 seq.)
>W1710786961
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3280749
3280674
-
Arg
CCT
[ENA]
¡û
>W1710857015
LLZU01000007
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
20509
20434
-
Arg
CCT
[ENA]
¡û
>W1710913908
LNSV01000018
Actinomycetota
Streptomyces kanasensis [LNSV]
51903
51976
+
Arg
CCT
[ENA]
¡û
>W1710991654
LPXW01000018
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
122414
122487
+
Arg
CCT
[ENA]
¡û
>W1711096110
LTHM01000004
Actinomycetota
Brevibacterium sp. HMSC063G07 [LTHM]
6344
6419
+
Arg
CCT
[ENA]
¡û
>W131159275
AQUX01000004
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
165265
165338
+
Arg
CCT
[ENA]
¡û
>W1711107374
LTSS01000132
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
30341
30268
-
Arg
CCT
[ENA]
¡û
>W131166388
ARCK01000047
Actinomycetota
Wenjunlia vitaminophila DSM 41686 [ARCK]
40452
40525
+
Arg
CCT
[ENA]
¡û
>W131168861
AREI01000003
Actinomycetota
Streptomyces sp. BoleA5 [AREI]
247748
247821
+
Arg
CCT
[ENA]
¡û
>W1711183414
LWLA01000014
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
101218
101291
+
Arg
CCT
[ENA]
¡û
>W1711185824
LWNS01000032
Actinomycetota
Brevibacterium sp. HMSC08F02 [LWNS]
7119
7194
+
Arg
CCT
[ENA]
¡û
>W1711187132
LWOU01000042
Actinomycetota
Brevibacterium sp. HMSC24B04 [LWOU]
8692
8617
-
Arg
CCT
[ENA]
¡û
>W1711187193
LWOW01000022
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
9355
9430
+
Arg
CCT
[ENA]
¡û
>W1711187762
LWPT01000053
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
6344
6419
+
Arg
CCT
[ENA]
¡û
>W131227708
AUFJ01000009
Actinomycetota
Brevibacterium album DSM 18261 [AUFJ]
333859
333784
-
Arg
CCT
[ENA]
¡û
>C171002008
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
785092
785017
-
Arg
CCT
-
¡û
>C171115975
CP021121
Actinomycetota
Streptomyces marincola SCSIO 03032 [CP021121]
3695806
3695881
+
Arg
CCT
-
¡û
>W131165130
ARBI01000006
Actinomycetota
Actinomycetospora chiangmaiensis DSM 45062 [ARBI]
89844
89919
+
Arg
CCT
[ENA]
¡û
>WENV180018868
FTAW01000035
[FTAW] metagenome; soil
8
81
+
Arg
CCT
[ENA]
¢þ
>WENV180023468
FTHY01000544
[FTHY] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¢þ
>WENV180028645
FTJE01372912
[FTJE] metagenome; soil
1389
1462
+
Arg
CCT
[ENA]
¢þ
>WENV180033139
FTKF01000037
[FTKF] metagenome; soil
1755
1828
+
Arg
CCT
[ENA]
¢þ
>WENV180033149
FTKF01001421
[FTKF] metagenome; soil
6131
6058
-
Arg
CCT
[ENA]
¢þ
>WENV180033174
FTKF01009600
[FTKF] metagenome; soil
117
191
+
Arg
CCT
[ENA]
¢þ
>WENV180035383
FTKT01455961
[FTKT] metagenome; soil
17733
17806
+
Arg
CCT
[ENA]
¢þ
>WENV180035391
FTKT01457702
[FTKT] metagenome; soil
26029
26102
+
Arg
CCT
[ENA]
¢þ
>W141216120
AZUQ01000001
Actinomycetota
Haloglycomyces albus DSM 45210 [AZUQ]
1573535
1573610
+
Arg
CCT
[ENA]
¡û
>W141243119
CAJD01000021
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
18606
18681
+
Arg
CCT
[ENA]
¡û
>WENV182643958
OJLW01003741
[OJLW] metagenome; surface
2599
2672
+
Arg
CCT
[ENA]
¢þ
>WENV182645492
OJLY01030502
[OJLY] metagenome; surface
562
489
-
Arg
CCT
[ENA]
¢þ
>WENV182646345
OJMA01004139
[OJMA] metagenome; surface
255
328
+
Arg
CCT
[ENA]
¢þ
>W141282699
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
89497
89424
-
Arg
CCT
[ENA]
¡û
>W141282746
JAIZ01000016
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
2588
2661
+
Arg
CCT
[ENA]
¡û
>WENV170024259
BCQL01034698
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1093
1020
-
Arg
CCT
[ENA]
¢þ
>WENV170565590
FJVZ01000733
[FJVZ] metagenome; soil
6525
6452
-
Arg
CCT
[ENA]
¢þ
>C181143830
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
1758537
1758610
+
Arg
CCT
-
¡û
>C181198613
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
4096610
4096683
+
Arg
CCT
-
¡û
>W141757013
JNXO01001382
Actinomycetota
Kitasatospora misakiensis [JNXO]
880
953
+
Arg
CCT
[ENA]
¡û
>W141760903
JOAI01000093
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
1815
1888
+
Arg
CCT
[ENA]
¡û
>W141763707
JOCF01000031
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
63168
63243
+
Arg
CCT
[ENA]
¡û
>W141765019
JODB01007596
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
911
984
+
Arg
CCT
[ENA]
¡û
>W141766007
JODS01000007
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
47866
47793
-
Arg
CCT
[ENA]
¡û
>W141770061
JOGF01003749
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
239
166
-
Arg
CCT
[ENA]
¡û
>W141771937
JOHN01000003
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
135391
135464
+
Arg
CCT
[ENA]
¡û
>W141772021
JOHO01000008
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
168988
169063
+
Arg
CCT
[ENA]
¡û
>W09113395
ABYP01000014
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
32350
32277
-
Arg
CCT
[ENA]
¡û
>W141774388
JOJA01000055
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
409
482
+
Arg
CCT
[ENA]
¡û
>W09123842
ACHF01000067
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
37692
37617
-
Arg
CCT
[ENA]
¡û
>W141819802
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
3978583
3978510
-
Arg
CCT
[ENA]
¡û
>W141819961
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2186583
2186656
+
Arg
CCT
[ENA]
¡û
>W141821643
JQNR01000005
Actinomycetota
Actinacidiphila yeochonensis CN732 [JQNR]
205036
205109
+
Arg
CCT
[ENA]
¡û
>W1910547987
FZOF01000002
Actinomycetota
Actinacidiphila glaucinigra CGMCC 4.1858 [FZOF]
246769
246842
+
Arg
CCT
[ENA]
¡û
>W1911497125
OCNE01000011
Actinomycetota
Streptomyces zhaozhouensis CGMCC 4.7095 [OCNE]
83117
83044
-
Arg
CCT
[ENA]
¡û
>W1911498469
OCTS01000007
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
38456
38383
-
Arg
CCT
[ENA]
¡û
>W1911594963
PNFZ01000003
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
153931
154006
+
Arg
CCT
[ENA]
¡û
>W1911810706
QYZP01000002
Actinomycetota
Nesterenkonia natronophila M8 [QYZP]
45139
45066
-
Arg
CCT
[ENA]
¡û
>W1810073007
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
4450649
4450722
+
Arg
CCT
[ENA]
¡û
>W1810089850
PGEZ01000001
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
1201908
1201834
-
Arg
CCT
[ENA]
¡û
>W1810120768
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
3332102
3332029
-
Arg
CCT
[ENA]
¡û
>W1810173004
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
5014798
5014871
+
Arg
CCT
[ENA]
¡û
>W1810186028
PKGO01000011
Actinomycetota
Brevibacterium ravenspurgense UMB0426 [PKGO]
40308
40382
+
Arg
CCT
[ENA]
¡û
>W1810187425
PKHO01000012
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
68485
68558
+
Arg
CCT
[ENA]
¡û
>W1810195820
PKSK01001267
Actinomycetota
Streptomyces sp. DJ [PKSK]
6357
6430
+
Arg
CCT
[ENA]
¡û
>W1810487191
QAYJ01000001
Actinomycetota
Nocardioides sp. CF204 [QAYJ]
257629
257554
-
Arg
CCT
[ENA]
¡û
>W1810568941
QEEZ01000006
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
78423
78350
-
Arg
CCT
[ENA]
¡û
>W1810573612
QEKW01000001
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
929425
929498
+
Arg
CCT
[ENA]
¡û
>W1810579912
QEST01000141
Actinomycetota
Streptomyces sp. PT12 [QEST]
29124
29197
+
Arg
CCT
[ENA]
¡û
>W1810694022
QLLT01000020
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
134054
133981
-
Arg
CCT
[ENA]
¡û
>W1810759005
QPJC01000006
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
179365
179292
-
Arg
CCT
[ENA]
¡û
>W1810907954
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6273204
6273277
+
Arg
CCT
[ENA]
¡û
>C151012260
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
798678
798605
-
Arg
CCT
[Ensembl]
¡û
>C151013296
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
2743775
2743848
+
Arg
CCT
[Ensembl]
¡û
>W1510013983
BBPL01000062
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
18937
19010
+
Arg
CCT
[ENA]
¡û
>W1510060966
CCXT01000324
Actinomycetota
Candidatus Streptomyces massiliensis massiliensis AP10 [CCXT]
3805
3732
-
Arg
CCT
[ENA]
¡û
>W1511398068
JTDJ01000037
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
46820
46745
-
Arg
CCT
[ENA]
¡û
>W1511555611
JZWY01000001
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
127
54
-
Arg
CCT
[ENA]
¡û
>W1511696798
LGDO01000142
Actinomycetota
Streptomyces sp. XY431 [LGDO]
6527
6600
+
Arg
CCT
[ENA]
¡û
>W1610165020
FAXE01000021
Actinomycetota
Streptomyces specialis [FAXE]
76676
76749
+
Arg
CCT
[ENA]
¡û
>W1610650816
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3280749
3280674
-
Arg
CCT
[ENA]
¡û
>W1610719396
LLZU01000007
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
20509
20434
-
Arg
CCT
[ENA]
¡û
>W1610772267
LNSV01000018
Actinomycetota
Streptomyces kanasensis [LNSV]
51903
51976
+
Arg
CCT
[ENA]
¡û
>W1610846269
LPXW01000018
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
122414
122487
+
Arg
CCT
[ENA]
¡û
>W1610846310
LPXX01000007
Actinomycetota
Brevibacterium ravenspurgense 5401308 = CCUG 53855 [LPXX]
18733
18808
+
Arg
CCT
[ENA]
¡û
>W1710166636
FAXE01000021
Actinomycetota
Streptomyces specialis [FAXE]
76676
76749
+
Arg
CCT
[ENA]
¡û
>W1710547623
FODD01000001
Actinomycetota
Actinacidiphila rubida rubidus [FODD]
250657
250584
-
Arg
CCT
[ENA]
¡û
>W1710560270
FONG01000008
Actinomycetota
Actinacidiphila alni [FONG]
242390
242465
+
Arg
CCT
[ENA]
¡û
>W1710605189
FWWS01000001
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
261716
261791
+
Arg
CCT
[ENA]
¡û
>W1710765802
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
37204
37279
+
Arg
CCT
[ENA]
¡û
>W1710769513
LISX01000004
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
356105
356030
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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