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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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Representative sequence of each cluster
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Sort by Identical group No.
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.267742 (121 seq.)
>W1711093849
LTFJ01000012
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
111677
111752
+
Ala
CGC
[ENA]
¡û
>W1711095166
LTGO01000038
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
13348
13421
+
Ala
CGC
[ENA]
¡û
>W1711096252
LTHP01000040
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
163
88
-
Ala
CGC
[ENA]
¡û
>W1711096303
LTHQ01000016
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
228798
228723
-
Ala
CGC
[ENA]
¡û
>W1711096614
LTHX01000057
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
21184
21109
-
Ala
CGC
[ENA]
¡û
>W1711097534
LTIU01000006
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
191489
191414
-
Ala
CGC
[ENA]
¡û
>W1711098020
LTJF01000012
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
28429
28504
+
Ala
CGC
[ENA]
¡û
>W1711098580
LTJR01000031
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
230624
230549
-
Ala
CGC
[ENA]
¡û
>W1711099041
LTKD01000014
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
40618
40693
+
Ala
CGC
[ENA]
¡û
>W1711099349
LTKK01000031
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
28431
28506
+
Ala
CGC
[ENA]
¡û
>W1711102292
LTNP01000030
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
71674
71749
+
Ala
CGC
[ENA]
¡û
>W1711102318
LTNQ01000015
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
233737
233662
-
Ala
CGC
[ENA]
¡û
>W1711102349
LTNR01000002
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
31224
31299
+
Ala
CGC
[ENA]
¡û
>W1711102436
LTNS01000037
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
32628
32703
+
Ala
CGC
[ENA]
¡û
>W1711102479
LTNT01000023
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
56999
57074
+
Ala
CGC
[ENA]
¡û
>W1711102504
LTNU01000002
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
29479
29554
+
Ala
CGC
[ENA]
¡û
>W1711102591
LTNV01000051
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
180900
180825
-
Ala
CGC
[ENA]
¡û
>W1711102629
LTNW01000059
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
26593
26518
-
Ala
CGC
[ENA]
¡û
>W1711103257
LTOO01000005
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
220
295
+
Ala
CGC
[ENA]
¡û
>W1711103457
LTOS01000039
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
98502
98427
-
Ala
CGC
[ENA]
¡û
>W1711103642
LTOW01000067
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
77554
77627
+
Ala
CGC
[ENA]
¡û
>W1711105952
LTRH01000078
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
13350
13423
+
Ala
CGC
[ENA]
¡û
>W1711106557
LTRY01000039
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
17456
17383
-
Ala
CGC
[ENA]
¡û
>W1711106994
LTSJ01000011
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
168
93
-
Ala
CGC
[ENA]
¡û
>W1711107205
LTSO01000034
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
17721
17648
-
Ala
CGC
[ENA]
¡û
>W1711108860
LTUC01000114
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
23481
23408
-
Ala
CGC
[ENA]
¡û
>W1711110048
LTVE01000010
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
235532
235457
-
Ala
CGC
[ENA]
¡û
>W1711113444
LTYH01000021
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
24804
24879
+
Ala
CGC
[ENA]
¡û
>W1711114753
LTZO01000058
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
45896
45969
+
Ala
CGC
[ENA]
¡û
>W1711114841
LTZQ01000016
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
225032
225107
+
Ala
CGC
[ENA]
¡û
>W1711114963
LTZS01000059
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
28710
28635
-
Ala
CGC
[ENA]
¡û
>W1711185883
LWNT01000064
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
17461
17388
-
Ala
CGC
[ENA]
¡û
>W1711185942
LWNU01000045
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
59324
59397
+
Ala
CGC
[ENA]
¡û
>W1711186515
LWOH01000008
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
27405
27330
-
Ala
CGC
[ENA]
¡û
>W1711186753
LWOM01000012
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
18188
18115
-
Ala
CGC
[ENA]
¡û
>W1711186843
LWON01000065
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
20732
20807
+
Ala
CGC
[ENA]
¡û
>W1711187669
LWPR01000010
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
35133
35208
+
Ala
CGC
[ENA]
¡û
>W1711187904
LWPW01000083
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
35962
36037
+
Ala
CGC
[ENA]
¡û
>W1711208418
LXGG01000020
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
67822
67895
+
Ala
CGC
[ENA]
¡û
>W1711427618
MIFV01000023
Actinomycetota
Corynebacterium amycolatum [MIFV]
221623
221548
-
Ala
CGC
[ENA]
¡û
>W1711492380
MKKI01000031
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
1727
1802
+
Ala
CGC
[ENA]
¡û
>W1711507490
MKXS01000009
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
28689
28614
-
Ala
CGC
[ENA]
¡û
>W1711510266
MLAL01000025
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
32867
32942
+
Ala
CGC
[ENA]
¡û
>W1711511765
MLCR01000022
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
59379
59452
+
Ala
CGC
[ENA]
¡û
>W1711517370
MLJM01000025
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
87191
87118
-
Ala
CGC
[ENA]
¡û
>W1711724019
MTPT01000030
Actinomycetota
Corynebacterium amycolatum [MTPT]
28547
28622
+
Ala
CGC
[ENA]
¡û
>C171001972
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
822307
822380
+
Ala
CGC
-
¡û
>C171064740
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1577210
1577137
-
Ala
CGC
-
¡û
>W131251661
CAVS020000030
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
39711
39786
+
Ala
CGC
[ENA]
¡û
>W131159185
AQUV01000003
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
328254
328181
-
Ala
CGC
[ENA]
¡û
>W141008913
AHAE01000045
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
16905
16830
-
Ala
CGC
[ENA]
¡û
>WENV180554259
OCJN01000036
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
73854
73927
+
Ala
CGC
[ENA]
¢þ
>WENV181212502
OFBQ01003500
[OFBQ] metagenome; hydrothermal vent
151
224
+
Ala
CGC
[ENA]
¢þ
>WENV181212578
OFBR01002855
[OFBR] metagenome; hydrothermal vent
423
350
-
Ala
CGC
[ENA]
¢þ
>WENV181326347
OFLL01000140
[OFLL] metagenome; faeces
3312
3385
+
Ala
CGC
[ENA]
¢þ
>W141243565
CAJP01000024
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
99102
99029
-
Ala
CGC
[ENA]
¡û
>W141243951
CAJZ01000080
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
5604
5679
+
Ala
CGC
[ENA]
¡û
>W141259174
CBYN010000069
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
10157
10082
-
Ala
CGC
[ENA]
¡û
>WENV182629099
OJKR01004602
[OJKR] metagenome; surface
211
284
+
Ala
CGC
[ENA]
¢þ
>WENV182636021
OJKZ01000102
[OJKZ] metagenome; surface
5859
5932
+
Ala
CGC
[ENA]
¢þ
>WENV182636059
OJKZ01000172
[OJKZ] metagenome; surface
11091
11164
+
Ala
CGC
[ENA]
¢þ
>WENV182640435
OJLB01011239
[OJLB] metagenome; surface
83
156
+
Ala
CGC
[ENA]
¢þ
>WENV182641864
OJLK01005019
[OJLK] metagenome; surface
493
566
+
Ala
CGC
[ENA]
¢þ
>WENV182643428
OJLU01010846
[OJLU] metagenome; surface
123
196
+
Ala
CGC
[ENA]
¢þ
>WENV182643538
OJLW01000034
[OJLW] metagenome; surface
5595
5668
+
Ala
CGC
[ENA]
¢þ
>WENV182643560
OJLW01000074
[OJLW] metagenome; surface
24063
24136
+
Ala
CGC
[ENA]
¢þ
>WENV182644751
OJLY01000278
[OJLY] metagenome; surface
909
982
+
Ala
CGC
[ENA]
¢þ
>WENV182644784
OJLY01000366
[OJLY] metagenome; surface
18524
18451
-
Ala
CGC
[ENA]
¢þ
>WENV182644830
OJLY01000523
[OJLY] metagenome; surface
11420
11347
-
Ala
CGC
[ENA]
¢þ
>WENV182646396
OJMA01012923
[OJMA] metagenome; surface
762
689
-
Ala
CGC
[ENA]
¢þ
>WENV182671538
OJNM01000133
[OJNM] metagenome; surface
14029
13956
-
Ala
CGC
[ENA]
¢þ
>WENV182671727
OJNM01001708
[OJNM] metagenome; surface
2290
2217
-
Ala
CGC
[ENA]
¢þ
>WENV182837604
OKGJ01001080
[OKGJ] human gut metagenome; human gut
220
293
+
Ala
CGC
[ENA]
¢þ
>WENV183087822
OLJO01002970
[OLJO] human gut metagenome; human gut
460
533
+
Ala
CGC
[ENA]
¢þ
>WENV183088000
OLJQ01003080
[OLJQ] human gut metagenome; human gut
716
643
-
Ala
CGC
[ENA]
¢þ
>WENV170684570
LFRM01046952
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
357
430
+
Ala
CGC
[ENA]
¢þ
>WENV170722090
LSQX01215834
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9639
9566
-
Ala
CGC
[ENA]
¢þ
>C181056558
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
2566374
2566301
-
Ala
CGC
-
¡û
>C181109977
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
46517
46590
+
Ala
CGC
-
¡û
>C181225913
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
847147
847220
+
Ala
CGC
-
¡û
>W09114649
ABZU01000010
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
105169
105244
+
Ala
CGC
[ENA]
¡û
>W1910225860
FMSX01000020
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
64760
64833
+
Ala
CGC
[ENA]
¡û
>W1910438339
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
370482
370409
-
Ala
CGC
[ENA]
¡û
>W1910469846
FWYQ01000031
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
31913
31986
+
Ala
CGC
[ENA]
¡û
>W1911179026
NQMQ01000011
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
120142
120069
-
Ala
CGC
[ENA]
¡û
>W1911243311
NSGK01000001
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
369487
369414
-
Ala
CGC
[ENA]
¡û
>W1911243374
NSGL01000001
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
816291
816218
-
Ala
CGC
[ENA]
¡û
>W1911243464
NSGM01000009
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
3897
3824
-
Ala
CGC
[ENA]
¡û
>W1911243497
NSGN01000007
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
129044
128971
-
Ala
CGC
[ENA]
¡û
>W1911243546
NSGO01000006
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
111932
111859
-
Ala
CGC
[ENA]
¡û
>W1911243588
NSGP01000005
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
23804
23877
+
Ala
CGC
[ENA]
¡û
>W1911551198
OVSI01000002
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
227901
227828
-
Ala
CGC
[ENA]
¡û
>W1911630681
PTJO01000005
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
399701
399628
-
Ala
CGC
[ENA]
¡û
>W1810187470
PKHP01000011
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
78616
78689
+
Ala
CGC
[ENA]
¡û
>W1810187488
PKHQ01000001
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
407561
407488
-
Ala
CGC
[ENA]
¡û
>W1810187607
PKHS01000003
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
266519
266446
-
Ala
CGC
[ENA]
¡û
>W1810187680
PKHT01000018
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
28565
28638
+
Ala
CGC
[ENA]
¡û
>C151013271
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
27398
27473
+
Ala
CGC
[Ensembl]
¡û
>C151034702
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
702745
702820
+
Ala
CGC
[Ensembl]
¡û
>C151039884
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1821594
1821519
-
Ala
CGC
[Ensembl]
¡û
>C151040797
CP008944
Actinomycetota
Corynebacterium atypicum R2070 [CP008944]
712040
712113
+
Ala
CGC
[Ensembl]
¡û
>C151045496
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
765181
765254
+
Ala
CGC
[Ensembl]
¡û
>W10124053
AEAU01000003
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
28509
28584
+
Ala
CGC
[ENA]
¡û
>C11106650
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
31399
31474
+
Ala
CGC
[Ensembl]
¡û
>W1511457798
JVIP01000018
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
224800
224725
-
Ala
CGC
[ENA]
¡û
>W1511464331
JVPT01000083
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
36212
36287
+
Ala
CGC
[ENA]
¡û
>W1511469476
JVVM01000025
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
252351
252276
-
Ala
CGC
[ENA]
¡û
>W11130890
AEAU01000003
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
28509
28584
+
Ala
CGC
[ENA]
¡û
>W1511476406
JWEP01000016
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
180958
180883
-
Ala
CGC
[ENA]
¡û
>W1511595781
LBNF01000074
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
1113
1188
+
Ala
CGC
[ENA]
¡û
>W11164185
AFIZ01000050
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
94469
94544
+
Ala
CGC
[ENA]
¡û
>W1610163635
FAUH01000006
Actinomycetota
Corynebacterium variabile [FAUH]
49200
49125
-
Ala
CGC
[ENA]
¡û
>W1610419426
FIZC01000013
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
251866
251941
+
Ala
CGC
[ENA]
¡û
>W1610436837
FJVG01000021
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
359027
359102
+
Ala
CGC
[ENA]
¡û
>C131005314
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
33004
33079
+
Ala
CGC
[Ensembl]
¡û
>W1610996180
LXGG01000020
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
67822
67895
+
Ala
CGC
[ENA]
¡û
>W1710165302
FAUH01000006
Actinomycetota
Corynebacterium variabile [FAUH]
49200
49125
-
Ala
CGC
[ENA]
¡û
>W1710419162
FIZC01000013
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
251866
251941
+
Ala
CGC
[ENA]
¡û
>W1710436573
FJVG01000021
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
359027
359102
+
Ala
CGC
[ENA]
¡û
>W1710534333
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
1875136
1875209
+
Ala
CGC
[ENA]
¡û
>W1710595993
FTMH01000014
Actinomycetota
Corynebacterium afermentans [FTMH]
172
99
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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