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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268023 (35 seq.)
>C008036
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2793710
2793635
-
Lys
TTT
[Ensembl]
¡û
>WENV180042551
LQAF01003913
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
187
262
+
Lys
TTT
[ENA]
¢þ
>WENV180042573
LQAF01007068
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
98
173
+
Lys
TTT
[ENA]
¢þ
>WENV180043048
LQAH01000606
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3459
3384
-
Lys
TTT
[ENA]
¢þ
>WENV180043575
LQAI01000844
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
4691
4616
-
Lys
TTT
[ENA]
¢þ
>WENV180043617
LQAI01002715
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1909
1834
-
Lys
TTT
[ENA]
¢þ
>WENV180043769
LQAI01017921
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV180044229
LQAJ01024229
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
119
44
-
Lys
TTT
[ENA]
¢þ
>WENV180751442
ODHS01053575
[ODHS] human metagenome; G_DNA_Supragingival plaque
150
75
-
Lys
TTT
[ENA]
¢þ
>WENV180769851
ODIG01191940
[ODIG] human metagenome; G_DNA_Tongue dorsum
170
95
-
Lys
TTT
[ENA]
¢þ
>WENV170677606
LDZT01007416
[LDZT] terrestrial metagenome; oil reservoir sample SB1
635
710
+
Lys
TTT
[ENA]
¢þ
>WENV170677625
LDZT01007441
[LDZT] terrestrial metagenome; oil reservoir sample SB1
15459
15384
-
Lys
TTT
[ENA]
¢þ
>WENV170692629
LGOV01017532
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
647
572
-
Lys
TTT
[ENA]
¢þ
>WENV170692720
LGOV01024455
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
268
343
+
Lys
TTT
[ENA]
¢þ
>WENV170697560
LGVF01154848
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
661
736
+
Lys
TTT
[ENA]
¢þ
>W09108875
ABTQ01000089
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
5391
5466
+
Lys
TTT
[ENA]
¡û
>W141619937
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
5996
5921
-
Lys
TTT
[ENA]
¡û
>W141619944
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
5344
5269
-
Lys
TTT
[ENA]
¡û
>W141619959
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108875
108800
-
Lys
TTT
[ENA]
¡û
>W141619974
JJMM01000024
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
339
264
-
Lys
TTT
[ENA]
¡û
>C10104801
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1282500
1282575
+
Lys
TTT
[Ensembl]
¡û
>C11107329
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
1023649
1023724
+
Lys
TTT
[Ensembl]
¡û
>C11108993
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
1140020
1139945
-
Lys
TTT
[Ensembl]
¡û
>C11109012
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
760028
759953
-
Lys
TTT
[Ensembl]
¡û
>W1511430019
JUED01000063
Bacillota
Desulfotomaculum sp. BICA1-6 [JUED]
215177
215252
+
Lys
TTT
[ENA]
¡û
>W1511564273
LADP01000018
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
244879
244954
+
Lys
TTT
[ENA]
¡û
>W1610613897
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
635
710
+
Lys
TTT
[ENA]
¡û
>W1610613916
LGGM01000033
Bacillota
Clostridiales bacterium 38_11 [LGGM]
15459
15384
-
Lys
TTT
[ENA]
¡û
>W1710590054
FRAR01000016
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
58560
58635
+
Lys
TTT
[ENA]
¡û
>W1710590060
FRAR01000018
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
50511
50436
-
Lys
TTT
[ENA]
¡û
>W1710594536
FSRH01000025
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
7995
7920
-
Lys
TTT
[ENA]
¡û
>W1710594543
FSRH01000025
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
7343
7268
-
Lys
TTT
[ENA]
¡û
>W1710594552
FSRH01000033
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
1251
1176
-
Lys
TTT
[ENA]
¡û
>W1710734980
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
635
710
+
Lys
TTT
[ENA]
¡û
>W1710734999
LGGM01000033
Bacillota
Clostridiales bacterium 38_11 [LGGM]
15459
15384
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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