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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268227 (78 seq.)
>W1711088666
LSZB01000458
Bacillota
Clostridium haemolyticum [LSZB]
9707
9782
+
Trp
CCA
[ENA]
¡û
>W1711090927
LTBA01000038
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
345
270
-
Trp
CCA
[ENA]
¡û
>W1711128554
LUSO01000002
Bacillota
Clostridium baratii [LUSO]
512078
512003
-
Trp
CCA
[ENA]
¡û
>W1711128555
LUSO01000002
Bacillota
Clostridium baratii [LUSO]
504706
504631
-
Trp
CCA
[ENA]
¡û
>W1711462071
MJHL01000010
Bacillota
Clostridium baratii [MJHL]
1070285
1070210
-
Trp
CCA
[ENA]
¡û
>W1711462072
MJHL01000010
Bacillota
Clostridium baratii [MJHL]
1062913
1062838
-
Trp
CCA
[ENA]
¡û
>W1711462108
MJHM01000002
Bacillota
Clostridium baratii [MJHM]
107657
107732
+
Trp
CCA
[ENA]
¡û
>W1711462109
MJHM01000002
Bacillota
Clostridium baratii [MJHM]
115029
115104
+
Trp
CCA
[ENA]
¡û
>W1711462228
MJHN01000019
Bacillota
Clostridium baratii [MJHN]
107657
107732
+
Trp
CCA
[ENA]
¡û
>W1711462229
MJHN01000019
Bacillota
Clostridium baratii [MJHN]
115029
115104
+
Trp
CCA
[ENA]
¡û
>W1711774224
MVIY01000030
Bacillota
Clostridium botulinum D/C [MVIY]
216
141
-
Trp
CCA
[ENA]
¡û
>W1711774310
MVIZ01000094
Bacillota
Clostridium botulinum D/C [MVIZ]
128
53
-
Trp
CCA
[ENA]
¡û
>W1711774338
MVJA01000054
Bacillota
Clostridium botulinum D/C [MVJA]
128
53
-
Trp
CCA
[ENA]
¡û
>W1711774417
MVJB01000091
Bacillota
Clostridium botulinum D/C [MVJB]
9610
9685
+
Trp
CCA
[ENA]
¡û
>W1711774461
MVJC01000100
Bacillota
Clostridium botulinum D/C [MVJC]
182
107
-
Trp
CCA
[ENA]
¡û
>C171030473
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
4469826
4469751
-
Trp
CCA
-
¡û
>C171030655
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1337143
1337068
-
Trp
CCA
-
¡û
>C171030656
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1329766
1329691
-
Trp
CCA
-
¡û
>C006264
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2187279
2187204
-
Trp
CCA
[Ensembl]
¡û
>WENV180160043
OAVB01064950
[OAVB] human gut metagenome; faeces
182
107
-
Trp
CCA
[ENA]
¢þ
>WENV180275730
OBHU01000157
[OBHU] human gut metagenome; feces
2929
3004
+
Trp
CCA
[ENA]
¢þ
>WENV180326981
OBKS01294271
[OBKS] human gut metagenome; human gut
214
141
-
Trp
CCA
[ENA]
¢þ
>WENV180455640
OBXO01017533
[OBXO] human gut metagenome; faeces
21
96
+
Trp
CCA
[ENA]
¢þ
>WENV180477194
OBYZ01000274
[OBYZ] human gut metagenome; faeces
1812
1887
+
Trp
CCA
[ENA]
¢þ
>WENV180941703
ODTZ01011034
[ODTZ] human metagenome; G_DNA_Stool
91
16
-
Trp
CCA
[ENA]
¢þ
>WENV181463762
OGEO01033853
[OGEO] metagenome; Human gut stool
244
319
+
Trp
CCA
[ENA]
¢þ
>WENV181501038
OGGH01032737
[OGGH] metagenome; Human gut stool
905
978
+
Trp
CCA
[ENA]
¢þ
>WENV181686775
OGOW01047139
[OGOW] human gut metagenome; faeces
146
219
+
Trp
CCA
[ENA]
¢þ
>WENV181826551
OGUL01023766
[OGUL] human gut metagenome; faeces
64
139
+
Trp
CCA
[ENA]
¢þ
>W08001222
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
185006
185081
+
Trp
CCA
[ENA]
¡û
>WENV182938467
OKVD01013229
[OKVD] human gut metagenome; human gut
371
296
-
Trp
CCA
[ENA]
¢þ
>WENV182952073
OKVV01001791
[OKVV] human gut metagenome; human gut
2160
2085
-
Trp
CCA
[ENA]
¢þ
>WENV183112876
OLNP01002955
[OLNP] human gut metagenome; faeces
9948
9873
-
Trp
CCA
[ENA]
¢þ
>W141427450
JENK01000052
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
109
34
-
Trp
CCA
[ENA]
¡û
>W141427539
JENM01000006
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
75468
75393
-
Trp
CCA
[ENA]
¡û
>W141427609
JENN01000009
Bacillota
Clostridium novyi A str. GD211209 [JENN]
53137
53062
-
Trp
CCA
[ENA]
¡û
>W141427715
JENO01000052
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
2888
2813
-
Trp
CCA
[ENA]
¡û
>W141427753
JENP01000007
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
87067
86992
-
Trp
CCA
[ENA]
¡û
>W141427844
JENQ01000081
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
4057
3982
-
Trp
CCA
[ENA]
¡û
>W141427952
JENR01000097
Bacillota
Clostridium botulinum D str. 16868 [JENR]
4322
4247
-
Trp
CCA
[ENA]
¡û
>W141428040
JENS01000112
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
242
167
-
Trp
CCA
[ENA]
¡û
>W141428082
JENT01000098
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
340
265
-
Trp
CCA
[ENA]
¡û
>W141428135
JENU01000008
Bacillota
Clostridium sp. K25 [JENU]
15615
15540
-
Trp
CCA
[ENA]
¡û
>W141428260
JENV01000023
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
86736
86811
+
Trp
CCA
[ENA]
¡û
>W141428325
JENW01000026
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
85022
85097
+
Trp
CCA
[ENA]
¡û
>W141428426
JENX01000041
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
15395
15320
-
Trp
CCA
[ENA]
¡û
>W09134461
ACSJ01000001
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
233055
233130
+
Trp
CCA
[ENA]
¡û
>C191063922
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
1144325
1144400
+
Trp
CCA
-
¡û
>W1910483275
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
296547
296622
+
Trp
CCA
[ENA]
¡û
>C151014230
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1760264
1760339
+
Trp
CCA
[Ensembl]
¡û
>C151014231
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1768258
1768333
+
Trp
CCA
[Ensembl]
¡û
>C11104933
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2432859
2432784
-
Trp
CCA
[Ensembl]
¡û
>W1510882105
JDRX01000009
Bacillota
Clostridium novyi A str. 4570 [JDRX]
64910
64835
-
Trp
CCA
[ENA]
¡û
>W1510882278
JDRZ01000065
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
363
288
-
Trp
CCA
[ENA]
¡û
>W1510882348
JDSA01000078
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
15395
15320
-
Trp
CCA
[ENA]
¡û
>W1510909007
JENJ01000018
Bacillota
Clostridium novyi A str. 4552 [JENJ]
38985
38910
-
Trp
CCA
[ENA]
¡û
>W1511551735
JZTY01000001
Bacillota
Clostridium baratii 771-14 [JZTY]
107101
107176
+
Trp
CCA
[ENA]
¡û
>W1511551736
JZTY01000001
Bacillota
Clostridium baratii 771-14 [JZTY]
115626
115701
+
Trp
CCA
[ENA]
¡û
>W11146159
AESB01000102
Bacillota
Clostridium botulinum BKT028387 [AESB]
4057
3982
-
Trp
CCA
[ENA]
¡û
>W11146245
AESC01000176
Bacillota
Clostridium botulinum V891 [AESC]
136
211
+
Trp
CCA
[ENA]
¡û
>W1511687818
LFVU01000001
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
77955
78030
+
Trp
CCA
[ENA]
¡û
>W1511707720
LGVP01000085
Bacillota
Clostridium botulinum 29401-CD [LGVP]
4139
4064
-
Trp
CCA
[ENA]
¡û
>W1610103125
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1620809
1620734
-
Trp
CCA
[ENA]
¡û
>W1610103126
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1612814
1612739
-
Trp
CCA
[ENA]
¡û
>W1610104215
CZBO01000003
Bacillota
Clostridium baratii [CZBO]
250208
250283
+
Trp
CCA
[ENA]
¡û
>W1610104216
CZBO01000003
Bacillota
Clostridium baratii [CZBO]
257578
257653
+
Trp
CCA
[ENA]
¡û
>W1610616865
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
927502
927427
-
Trp
CCA
[ENA]
¡û
>W1610616866
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
920126
920051
-
Trp
CCA
[ENA]
¡û
>W1610925126
LTBA01000038
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
345
270
-
Trp
CCA
[ENA]
¡û
>W1710105880
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1620809
1620734
-
Trp
CCA
[ENA]
¡û
>W1710105881
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1612814
1612739
-
Trp
CCA
[ENA]
¡û
>W1710106919
CZBO01000003
Bacillota
Clostridium baratii [CZBO]
250208
250283
+
Trp
CCA
[ENA]
¡û
>W1710106920
CZBO01000003
Bacillota
Clostridium baratii [CZBO]
257578
257653
+
Trp
CCA
[ENA]
¡û
>W1710586811
FQXM01000006
Bacillota
Clostridium grantii DSM 8605 [FQXM]
34401
34326
-
Trp
CCA
[ENA]
¡û
>W1710742204
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
927502
927427
-
Trp
CCA
[ENA]
¡û
>W1710742205
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
920126
920051
-
Trp
CCA
[ENA]
¡û
>W1710754990
LHYV01000108
Bacillota
Clostridium botulinum [LHYV]
4074
3999
-
Trp
CCA
[ENA]
¡û
>W1710755052
LHYX01000069
Bacillota
Clostridium botulinum [LHYX]
131
56
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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