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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268287 (70 seq.)
>A171000822
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2200419
2200492
+
Thr
CGT
-
¡û
>A171001195
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
885992
885920
-
Thr
CGT
-
¡û
>A171001418
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
840985
840913
-
Thr
CGT
-
¡û
>A171001598
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1570980
1570908
-
Thr
CGT
-
¡û
>A171006230
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
836684
836611
-
Thr
CGT
-
¡û
>WENV180318692
OBKM01004855
[OBKM] metagenome; water
1246
1319
+
Thr
CGT
[ENA]
¢þ
>ENV08001182
ABMS01000679
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
87
13
-
Thr
CGT
[ENA]
¡û
>WENV170009005
APHM01019689
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1152
1080
-
Thr
CGT
[ENA]
¢þ
>WENV170009122
APHM01021403
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
12489
12561
+
Thr
CGT
[ENA]
¢þ
>WENV170659924
JXWS01040170
[JXWS] soil metagenome; rice field; elevated CO2
182
255
+
Thr
CGT
[ENA]
¢þ
>WENV170659978
JXWS01066578
[JXWS] soil metagenome; rice field; elevated CO2
511
439
-
Thr
CGT
[ENA]
¢þ
>WENV170660058
JXWS01119283
[JXWS] soil metagenome; rice field; elevated CO2
460
532
+
Thr
CGT
[ENA]
¢þ
>WENV170703727
LKMJ01016133
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6610
6538
-
Thr
CGT
[ENA]
¢þ
>WENV170704192
LKMJ01024785
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
41
114
+
Thr
CGT
[ENA]
¢þ
>W1910011033
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
1016005
1015933
-
Thr
CGT
[ENA]
¡û
>W1910186259
CCDK010000005
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
389673
389601
-
Thr
CGT
[ENA]
¡û
>W1910193541
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1203005
1203078
+
Thr
CGT
[ENA]
¡û
>W1910226997
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
965315
965242
-
Thr
CGT
[ENA]
¡û
>W1910227100
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
872433
872505
+
Thr
CGT
[ENA]
¡û
>W1910228504
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
652475
652547
+
Thr
CGT
[ENA]
¡û
>W1910229609
FOAD01000001
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
523472
523399
-
Thr
CGT
[ENA]
¡û
>W1910230348
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
816342
816270
-
Thr
CGT
[ENA]
¡û
>W1910230493
FOTC01000002
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
480070
479998
-
Thr
CGT
[ENA]
¡û
>W1910230699
FOYS01000002
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
621611
621683
+
Thr
CGT
[ENA]
¡û
>W1910230739
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
1161831
1161759
-
Thr
CGT
[ENA]
¡û
>W1910281621
FQWV01000001
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
54303
54231
-
Thr
CGT
[ENA]
¡û
>W1910573478
JPES01000057
Euryarchaeota
Haloferax sp. ATB1 [JPES]
22110
22038
-
Thr
CGT
[ENA]
¡û
>W1910574983
JQKV01000001
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
396810
396882
+
Thr
CGT
[ENA]
¡û
>W1910912520
NHPJ01000109
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
18520
18448
-
Thr
CGT
[ENA]
¡û
>W1911629815
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
898708
898635
-
Thr
CGT
[ENA]
¡û
>W1911629876
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
781609
781681
+
Thr
CGT
[ENA]
¡û
>W1911629913
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
593331
593258
-
Thr
CGT
[ENA]
¡û
>W1911629952
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
540244
540316
+
Thr
CGT
[ENA]
¡û
>W1911630013
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
593331
593258
-
Thr
CGT
[ENA]
¡û
>W1911630065
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
958652
958579
-
Thr
CGT
[ENA]
¡û
>W1911655723
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
803743
803815
+
Thr
CGT
[ENA]
¡û
>W1911682233
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
1219322
1219250
-
Thr
CGT
[ENA]
¡û
>W1911709148
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
257149
257222
+
Thr
CGT
[ENA]
¡û
>W1911709494
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
898708
898635
-
Thr
CGT
[ENA]
¡û
>W1911709657
QPLR01000008
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
11936
11863
-
Thr
CGT
[ENA]
¡û
>W1911717809
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
916486
916558
+
Thr
CGT
[ENA]
¡û
>W1911769999
QXIJ01000014
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
46863
46935
+
Thr
CGT
[ENA]
¡û
>SRA1001261
SRR001060.13510
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
87
13
-
Thr
CGT
[SRA]
>W1610000741
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
586493
586566
+
Thr
CGT
[ENA]
¡û
>W1610005871
ALJD01000003
Euryarchaeota
Halogranum salarium B-1 [ALJD]
324537
324609
+
Thr
CGT
[ENA]
¡û
>W1610011507
ANPG01000120
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
4173
4246
+
Thr
CGT
[ENA]
¡û
>W1610011789
AOHT01000051
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
3698
3625
-
Thr
CGT
[ENA]
¡û
>W1610011819
AOHU01000094
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
34591
34663
+
Thr
CGT
[ENA]
¡û
>W1610011872
AOHV01000038
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
41389
41461
+
Thr
CGT
[ENA]
¡û
>W1610013460
AOLD01000021
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
43789
43862
+
Thr
CGT
[ENA]
¡û
>W1610013528
AOLE01000019
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
570567
570640
+
Thr
CGT
[ENA]
¡û
>W1610013556
AOLF01000013
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
41546
41473
-
Thr
CGT
[ENA]
¡û
>W1610013614
AOLG01000009
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
459692
459619
-
Thr
CGT
[ENA]
¡û
>W1610013680
AOLH01000019
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
36702
36775
+
Thr
CGT
[ENA]
¡û
>W1610013701
AOLI01000006
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
86689
86616
-
Thr
CGT
[ENA]
¡û
>W1610013749
AOLJ01000007
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
39924
39996
+
Thr
CGT
[ENA]
¡û
>W1610013826
AOLK01000015
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
9658
9586
-
Thr
CGT
[ENA]
¡û
>W1610013938
AOLM01000019
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
7986
8059
+
Thr
CGT
[ENA]
¡û
>W1610013995
AOLN01000018
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
438018
438090
+
Thr
CGT
[ENA]
¡û
>W1610014012
AOLO01000006
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
336512
336587
+
Thr
CGT
[ENA]
¡û
>W1610014100
AOLP01000019
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
282644
282717
+
Thr
CGT
[ENA]
¡û
>W1610019155
ARPY01000178
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
1748
1676
-
Thr
CGT
[ENA]
¡û
>W1610019185
ARPZ01000372
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
1028
1100
+
Thr
CGT
[ENA]
¡û
>W1610020273
ASGZ01000004
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
4664
4737
+
Thr
CGT
[ENA]
¡û
>W1610029938
AXZD01000008
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
150661
150589
-
Thr
CGT
[ENA]
¡û
>W1610784311
LOEP01000032
Euryarchaeota
Haloferax sp. Q22 [LOEP]
175338
175266
-
Thr
CGT
[ENA]
¡û
>W1610799796
LOPU01000018
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
259296
259223
-
Thr
CGT
[ENA]
¡û
>W1610799860
LOPV01000440
Euryarchaeota
Haloferax profundi SB29 [LOPV]
1574
1501
-
Thr
CGT
[ENA]
¡û
>W1610799866
LOPW01000001
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
169293
169220
-
Thr
CGT
[ENA]
¡û
>W1610925044
LTAZ01000004
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
767538
767611
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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