This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268312 (30 seq.)
>A171000522
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1853718
1853792
+
Asp
GTC
-
¡û
>A171000549
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1763696
1763769
+
Asp
GTC
-
¡û
>A171000576
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1867724
1867797
+
Asp
GTC
-
¡û
>A171000603
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1767956
1768029
+
Asp
GTC
-
¡û
>A171000630
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1799827
1799900
+
Asp
GTC
-
¡û
>A171000673
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
825988
825915
-
Asp
GTC
-
¡û
>A171001922
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1647548
1647621
+
Asp
GTC
-
¡û
>A171001948
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1792034
1792107
+
Asp
GTC
-
¡û
>A171003443
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1633028
1633101
+
Asp
GTC
-
¡û
>A171005955
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1170130
1170056
-
Asp
GTC
-
¡û
>A171005982
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1170133
1170059
-
Asp
GTC
-
¡û
>A171006009
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1170157
1170083
-
Asp
GTC
-
¡û
>A171006778
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
813203
813130
-
Asp
GTC
-
¡û
>A171007601
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
185653
185579
-
Asp
GTC
-
¡û
>WENV181406339
OGCG01000132
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
213
139
-
Asp
GTC
[ENA]
¢þ
>WENV181406502
OGCG01000351
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
9231
9158
-
Asp
GTC
[ENA]
¢þ
>W1911654439
QEFI01000001
Thermoproteota
Sulfolobus sp. SCGC AB-777_L09 [QEFI]
41019
41092
+
Asp
GTC
[ENA]
¡û
>ENV09004242
ADKL01000413
Hot springs metagenome ctg_1106426165452
1549
1475
-
Asp
GTC
[ENA]
¡û
>W1610001082
ACQS01000002
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACQS]
135955
136029
+
Asp
GTC
[ENA]
¡û
>W1610001518
ACUK01000119
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACUK]
66198
66124
-
Asp
GTC
[ENA]
¡û
>W1610004547
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK]
1805622
1805695
+
Asp
GTC
[ENA]
¡û
>W1610004606
AHJM01000003
Thermoproteota
Sulfolobus islandicus M.16.13 [AHJM]
918183
918256
+
Asp
GTC
[ENA]
¡û
>W1610004634
AHJN01000003
Thermoproteota
Sulfolobus islandicus M.16.22 [AHJN]
833904
833977
+
Asp
GTC
[ENA]
¡û
>W1610004662
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO]
1781649
1781722
+
Asp
GTC
[ENA]
¡û
>W1610004692
AHJP01000004
Thermoproteota
Sulfolobus islandicus M.16.30 [AHJP]
891397
891470
+
Asp
GTC
[ENA]
¡û
>W1610004720
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ]
1799530
1799603
+
Asp
GTC
[ENA]
¡û
>W1610004749
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR]
1763156
1763229
+
Asp
GTC
[ENA]
¡û
>W1610004779
AHJS01000002
Thermoproteota
Sulfolobus islandicus M.16.46 [AHJS]
952175
952248
+
Asp
GTC
[ENA]
¡û
>W1610004807
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT]
1814332
1814405
+
Asp
GTC
[ENA]
¡û
>W1610045945
BBBY01000025
Thermoproteota
Sulfuracidifex metallicus DSM 6482 = JCM 9184 [BBBY]
20111
20186
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK