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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268466 (43 seq.)
>C171030480
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
3147871
3147796
-
Lys
TTT
-
¡û
>C171030511
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
116561
116486
-
Lys
TTT
-
¡û
>C171030514
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
92526
92451
-
Lys
TTT
-
¡û
>C171030515
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
63307
63232
-
Lys
TTT
-
¡û
>C171077693
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
4008698
4008623
-
Lys
TTT
-
¡û
>w025910
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
1517567
1517490
-
Lys
TTT
[ENA]
¡û
>WENV180315018
OBKH01004955
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
510
585
+
Lys
TTT
[ENA]
¢þ
>WENV180356476
OBNK01035793
[OBNK] sediment metagenome; sediment
243
168
-
Lys
TTT
[ENA]
¢þ
>C08003392
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
3502424
3502352
-
Lys
TTT
[Ensembl]
¡û
>W141239878
CAEV01000125
Bacillota
Clostridium senegalense JC122 [CAEV]
1194
1119
-
Lys
TTT
[ENA]
¡û
>W141261380
CCAT010000040
Bacillota
Clostridium ihumii anorexicamassiliense AP5 [CCAT]
323
398
+
Lys
TTT
[ENA]
¡û
>WENV170660237
JXWT01040721
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
164
239
+
Lys
TTT
[ENA]
¢þ
>C191089278
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
60127
60202
+
Lys
TTT
-
¡û
>C191089299
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648351
648426
+
Lys
TTT
-
¡û
>C191089310
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
649345
649420
+
Lys
TTT
-
¡û
>C191089322
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
1121690
1121765
+
Lys
TTT
-
¡û
>C191106394
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
52854
52929
+
Lys
TTT
-
¡û
>C191106434
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2307973
2307898
-
Lys
TTT
-
¡û
>C191106445
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2306931
2306856
-
Lys
TTT
-
¡û
>C191106457
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
1884799
1884724
-
Lys
TTT
-
¡û
>C191138078
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
64156
64231
+
Lys
TTT
-
¡û
>C191138093
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
676470
676545
+
Lys
TTT
-
¡û
>C191138103
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
677752
677827
+
Lys
TTT
-
¡û
>W141734343
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
1195641
1195716
+
Lys
TTT
[ENA]
¡û
>W141734344
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
1204956
1205031
+
Lys
TTT
[ENA]
¡û
>W141734391
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
342285
342210
-
Lys
TTT
[ENA]
¡û
>W141734403
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
341195
341120
-
Lys
TTT
[ENA]
¡û
>W1910129106
BHYK01000006
Bacillota
Clostridium tagluense A121 [BHYK]
167922
167847
-
Lys
TTT
[ENA]
¡û
>W1910129116
BHYK01000006
Bacillota
Clostridium tagluense A121 [BHYK]
167008
166933
-
Lys
TTT
[ENA]
¡û
>W1910129139
BHYK01000031
Bacillota
Clostridium tagluense A121 [BHYK]
131
206
+
Lys
TTT
[ENA]
¡û
>W1910129155
BHYK01000054
Bacillota
Clostridium tagluense A121 [BHYK]
835
910
+
Lys
TTT
[ENA]
¡û
>W1910129158
BHYK01000096
Bacillota
Clostridium tagluense A121 [BHYK]
20
95
+
Lys
TTT
[ENA]
¡û
>C09103305
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
3433926
3433851
-
Lys
TTT
[Ensembl]
¡û
>W1810295720
PTIS01000010
Bacillota
Clostridium algidicarnis DSM 15099 [PTIS]
102
177
+
Lys
TTT
[ENA]
¡û
>W1810295748
PTIS01000034
Bacillota
Clostridium algidicarnis DSM 15099 [PTIS]
127
202
+
Lys
TTT
[ENA]
¡û
>W1610604374
LFQX01000106
Bacillota
Clostridium botulinum [LFQX]
79
4
-
Lys
TTT
[ENA]
¡û
>W1710586720
FQXL01000004
Bacillota
Clostridium magnum DSM 2767 [FQXL]
332763
332688
-
Lys
TTT
[ENA]
¡û
>W1710586739
FQXL01000007
Bacillota
Clostridium magnum DSM 2767 [FQXL]
73125
73200
+
Lys
TTT
[ENA]
¡û
>W1710586797
FQXL01000065
Bacillota
Clostridium magnum DSM 2767 [FQXL]
1169
1244
+
Lys
TTT
[ENA]
¡û
>W1710588100
FQZB01000032
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
302
377
+
Lys
TTT
[ENA]
¡û
>W1710588101
FQZB01000032
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
630
705
+
Lys
TTT
[ENA]
¡û
>W1710588106
FQZB01000034
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
302
377
+
Lys
TTT
[ENA]
¡û
>W1710725890
LFQX01000106
Bacillota
Clostridium botulinum [LFQX]
79
4
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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