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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268606 (24 seq.)
>W1710797205
LJSV01000024
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
34029
33954
-
Thr
TGT
[ENA]
¡û
>W1711501934
MKSE01000012
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
223643
223718
+
Thr
TGT
[ENA]
¡û
>WENV180016422
FSUX01000954
[FSUX] metagenome; soil
2713
2788
+
Thr
TGT
[ENA]
¡û
>WENV180016444
FSUX01001713
[FSUX] metagenome; soil
3010
2935
-
Thr
TGT
[ENA]
¡û
>WENV180017146
FSWM01000976
[FSWM] metagenome; soil
2128
2203
+
Thr
TGT
[ENA]
¡û
>WENV180022188
FTFT01001957
[FTFT] metagenome; soil
279
204
-
Thr
TGT
[ENA]
¡û
>WENV180026388
FTIT01030628
[FTIT] metagenome; soil
528
453
-
Thr
TGT
[ENA]
¡û
>WENV180028168
FTJA01001244
[FTJA] metagenome; soil
599
524
-
Thr
TGT
[ENA]
¡û
>WENV180030472
FTJM01071611
[FTJM] metagenome; soil
392
467
+
Thr
TGT
[ENA]
¡û
>WENV180292780
OBIV01621937
[OBIV] soil metagenome; Clay
51
126
+
Thr
TGT
[ENA]
¡û
>WENV180358308
OBNP01027401
[OBNP] marine metagenome; seawater
284
209
-
Thr
TGT
[ENA]
¡û
>W141043756
AMGO01000007
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
295109
295184
+
Thr
TGT
[ENA]
¡û
>WENV180694192
OCZS012053007
[OCZS] soil metagenome; soil
16
90
+
Thr
TGT
[ENA]
¡û
>WENV181233932
OFET01000361
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1842
1917
+
Thr
TGT
[ENA]
¡û
>WENV183740952
PJUF01021122
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
718
643
-
Thr
TGT
[ENA]
¡û
>WENV170578048
FSSH01007643
[FSSH] freshwater metagenome; drinking water
1763
1838
+
Thr
TGT
[ENA]
¡û
>WENV170798093
MDSV01191324
[MDSV] marine metagenome; seawater
389
464
+
Thr
TGT
[ENA]
¡û
>WENV170864074
MDTB01100415
[MDTB] marine metagenome; seawater
432
507
+
Thr
TGT
[ENA]
¡û
>WENV170961900
MLJW01005595
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
547
472
-
Thr
TGT
[ENA]
¡û
>W1810722625
QNVJ01000009
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
62629
62704
+
Thr
TGT
[ENA]
¡û
>W2010700666
JACHGB010000006
Betaproteobacteria
Quisquiliibacterium transsilvanicum DSM 29781 [JACHGB]
68251
68176
-
Thr
TGT
[ENA]
¡û
>C211283697
CP071057
Alphaproteobacteria
Marinicauda algicola RMAR8-3 [CP071057]
258183
258108
-
Thr
TGT
-
¡û
>W2110751856
NHSD01000134
Alphaproteobacteria
Rhodobaculum claviforme LMG 28126 [NHSD]
613
538
-
Thr
TGT
[ENA]
¡û
>W1610661162
LJSV01000024
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
34029
33954
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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