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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268826 (41 seq.)
>W1711128600
LUSO01000014
Bacillota
Clostridium baratii [LUSO]
2788
2713
-
Phe
GAA
[ENA]
¡û
>W1711128603
LUSO01000021
Bacillota
Clostridium baratii [LUSO]
192
267
+
Phe
GAA
[ENA]
¡û
>W1711128606
LUSO01000022
Bacillota
Clostridium baratii [LUSO]
144472
144397
-
Phe
GAA
[ENA]
¡û
>W1711462022
MJHL01000001
Bacillota
Clostridium baratii [MJHL]
191
266
+
Phe
GAA
[ENA]
¡û
>W1711462056
MJHL01000007
Bacillota
Clostridium baratii [MJHL]
196
271
+
Phe
GAA
[ENA]
¡û
>W1711462060
MJHL01000008
Bacillota
Clostridium baratii [MJHL]
2901
2826
-
Phe
GAA
[ENA]
¡û
>W1711462171
MJHM01000030
Bacillota
Clostridium baratii [MJHM]
144420
144345
-
Phe
GAA
[ENA]
¡û
>W1711462173
MJHM01000031
Bacillota
Clostridium baratii [MJHM]
2535
2460
-
Phe
GAA
[ENA]
¡û
>W1711462174
MJHM01000032
Bacillota
Clostridium baratii [MJHM]
18636
18561
-
Phe
GAA
[ENA]
¡û
>W1711462178
MJHN01000002
Bacillota
Clostridium baratii [MJHN]
128
203
+
Phe
GAA
[ENA]
¡û
>W1711462181
MJHN01000003
Bacillota
Clostridium baratii [MJHN]
18636
18561
-
Phe
GAA
[ENA]
¡û
>W1711462185
MJHN01000004
Bacillota
Clostridium baratii [MJHN]
29420
29495
+
Phe
GAA
[ENA]
¡û
>C171030600
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
2158959
2159034
+
Phe
GAA
-
¡û
>C171030601
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
2166461
2166536
+
Phe
GAA
-
¡û
>C171030621
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1672826
1672751
-
Phe
GAA
-
¡û
>WENV182938254
OKVD01001253
[OKVD] human gut metagenome; human gut
1049
974
-
Phe
GAA
[ENA]
¢þ
>WENV182950298
OKVR01002892
[OKVR] human gut metagenome; human gut
1610
1535
-
Phe
GAA
[ENA]
¢þ
>C151014197
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1411143
1411218
+
Phe
GAA
[Ensembl]
¡û
>C151014257
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
922196
922121
-
Phe
GAA
[Ensembl]
¡û
>C151014258
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
914702
914627
-
Phe
GAA
[Ensembl]
¡û
>W1511551741
JZTY01000006
Bacillota
Clostridium baratii 771-14 [JZTY]
451233
451158
-
Phe
GAA
[ENA]
¡û
>W1511551767
JZTY01000011
Bacillota
Clostridium baratii 771-14 [JZTY]
25300
25375
+
Phe
GAA
[ENA]
¡û
>W1511551777
JZTY01000025
Bacillota
Clostridium baratii 771-14 [JZTY]
28677
28602
-
Phe
GAA
[ENA]
¡û
>W1610103129
CZAV01000002
Bacillota
Clostridium baratii [CZAV]
433936
433861
-
Phe
GAA
[ENA]
¡û
>W1610103166
CZAV01000009
Bacillota
Clostridium baratii [CZAV]
2607
2532
-
Phe
GAA
[ENA]
¡û
>W1610103167
CZAV01000010
Bacillota
Clostridium baratii [CZAV]
27658
27583
-
Phe
GAA
[ENA]
¡û
>W1610104206
CZBO01000002
Bacillota
Clostridium baratii [CZBO]
440004
439929
-
Phe
GAA
[ENA]
¡û
>W1610104242
CZBO01000012
Bacillota
Clostridium baratii [CZBO]
2637
2562
-
Phe
GAA
[ENA]
¡û
>W1610104243
CZBO01000013
Bacillota
Clostridium baratii [CZBO]
27581
27506
-
Phe
GAA
[ENA]
¡û
>W1610616811
LGRR01000002
Bacillota
Clostridium baratii [LGRR]
142
217
+
Phe
GAA
[ENA]
¡û
>W1610616820
LGRR01000005
Bacillota
Clostridium baratii [LGRR]
143
218
+
Phe
GAA
[ENA]
¡û
>W1610616869
LGRR01000023
Bacillota
Clostridium baratii [LGRR]
33887
33962
+
Phe
GAA
[ENA]
¡û
>W1710105884
CZAV01000002
Bacillota
Clostridium baratii [CZAV]
433936
433861
-
Phe
GAA
[ENA]
¡û
>W1710105921
CZAV01000009
Bacillota
Clostridium baratii [CZAV]
2607
2532
-
Phe
GAA
[ENA]
¡û
>W1710105922
CZAV01000010
Bacillota
Clostridium baratii [CZAV]
27658
27583
-
Phe
GAA
[ENA]
¡û
>W1710106910
CZBO01000002
Bacillota
Clostridium baratii [CZBO]
440004
439929
-
Phe
GAA
[ENA]
¡û
>W1710106946
CZBO01000012
Bacillota
Clostridium baratii [CZBO]
2637
2562
-
Phe
GAA
[ENA]
¡û
>W1710106947
CZBO01000013
Bacillota
Clostridium baratii [CZBO]
27581
27506
-
Phe
GAA
[ENA]
¡û
>W1710742150
LGRR01000002
Bacillota
Clostridium baratii [LGRR]
142
217
+
Phe
GAA
[ENA]
¡û
>W1710742159
LGRR01000005
Bacillota
Clostridium baratii [LGRR]
143
218
+
Phe
GAA
[ENA]
¡û
>W1710742208
LGRR01000023
Bacillota
Clostridium baratii [LGRR]
33887
33962
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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