This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268835 (12 seq.)
>W1711460766
MJGC01000023
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
381
308
-
His
GTG
[ENA]
¡û
>W1711666528
MRCB01000001
Cyanobacteriota
Hydrococcus rivularis NIES-593 [MRCB]
225220
225147
-
His
GTG
[ENA]
¡û
>W08011525
ABVJ01000003
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
38406
38479
+
His
GTG
[ENA]
¡û
>WENV181411358
OGCI01022154
[OGCI] hot springs metagenome; Hot spring water
470
543
+
His
GTG
[ENA]
¢þ
>WENV181414101
OGCL01000012
[OGCL] hot springs metagenome; Hot spring water
17601
17528
-
His
GTG
[ENA]
¢þ
>C181004889
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
3634812
3634885
+
His
GTG
-
¡û
>C181030496
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
5934
5861
-
His
GTG
-
¡û
>C191001196
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
200817
200890
+
His
GTG
-
¡û
>C09103566
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
31582
31655
+
His
GTG
[Ensembl]
¡û
>W1810069168
PEBC01000008
Cyanobacteriota
Cyanobacterium aponinum B-1201 [PEBC]
53033
52960
-
His
GTG
[ENA]
¡û
>C131004352
CP003590
Cyanobacteriota
Pleurocapsa sp. PCC 7327 [CP003590]
4862654
4862581
-
His
GTG
[Ensembl]
¡û
>C131010503
CP003947
Cyanobacteriota
Cyanobacterium aponinum PCC 10605 [CP003947]
1677665
1677592
-
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK