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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269265 (73 seq.)
>W1710888774
LMZZ01000014
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
95550
95475
-
Thr
GGT
[ENA]
¡û
>W1710945185
LORG01000017
Gammaproteobacteria
Marinobacter sp. YWL01 [LORG]
8300
8375
+
Thr
GGT
[ENA]
¡û
>W1711126301
LUOK01000001
Gammaproteobacteria
Marinobacter sp. REDSEA-S15_B16 [LUOK]
5338
5263
-
Thr
GGT
[ENA]
¡û
>W1711221562
LXRF01000007
Gammaproteobacteria
Marinobacter adhaerens [LXRF]
589
514
-
Thr
GGT
[ENA]
¡û
>W1711766167
MUYD01000008
Gammaproteobacteria
[Haemophilus] ducreyi [MUYD]
148980
149055
+
Thr
GGT
[ENA]
¡û
>C171066397
CP017715
Gammaproteobacteria
Marinobacter salinus Hb8 [CP017715]
2696882
2696807
-
Thr
GGT
-
¡û
>C010504
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
49294
49219
-
Thr
GGT
[Ensembl]
¡û
>WENV180346554
OBLN01151496
[OBLN] sediment metagenome; sediment
19
94
+
Thr
GGT
[ENA]
¢þ
>W141051565
ANIE01000012
Gammaproteobacteria
Marinobacter nitratireducens AK21 [ANIE]
8310
8385
+
Thr
GGT
[ENA]
¡û
>WENV180591665
OCOV01070002
[OCOV] marine metagenome; ENVO:01000301
113
188
+
Thr
GGT
[ENA]
¢þ
>WENV181012861
ODWK01053382
[ODWK] human metagenome; G_DNA_Supragingival plaque
209
134
-
Thr
GGT
[ENA]
¢þ
>WENV182546129
OJBO01001181
[OJBO] seawater metagenome; Sea water
8290
8365
+
Thr
GGT
[ENA]
¢þ
>WENV182549501
OJBY01001463
[OJBY] seawater metagenome; Sea water
533
458
-
Thr
GGT
[ENA]
¢þ
>WENV182550888
OJCB01001279
[OJCB] seawater metagenome; Sea water
8315
8390
+
Thr
GGT
[ENA]
¢þ
>WENV182558766
OJDN01002734
[OJDN] seawater metagenome; Sea water
2802
2877
+
Thr
GGT
[ENA]
¢þ
>WENV182572803
OJFM01018035
[OJFM] seawater metagenome; Sea water
203
128
-
Thr
GGT
[ENA]
¢þ
>WENV182574238
OJFR01001049
[OJFR] seawater metagenome; Sea water
203
128
-
Thr
GGT
[ENA]
¢þ
>WENV170187395
CEPA01156149
[CEPA] marine metagenome genome assembly TARA_052_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
405
480
+
Thr
GGT
[ENA]
¢þ
>WENV170201136
CEPP01078826
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8296
8371
+
Thr
GGT
[ENA]
¢þ
>WENV170276684
CERO01008764
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
318
243
-
Thr
GGT
[ENA]
¢þ
>WENV170381834
CETW01222988
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
187
262
+
Thr
GGT
[ENA]
¢þ
>WENV170703518
LKMJ01013044
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6920
6995
+
Thr
GGT
[ENA]
¢þ
>WENV170703606
LKMJ01014454
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
247
172
-
Thr
GGT
[ENA]
¢þ
>WENV170962253
MRWF01010604
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
972
897
-
Thr
GGT
[ENA]
¢þ
>WENV170964171
MRWG01004316
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
328
253
-
Thr
GGT
[ENA]
¢þ
>WENV170964611
MRWG01023321
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1897
1972
+
Thr
GGT
[ENA]
¢þ
>C181055838
CP022037
Gammaproteobacteria
[Haemophilus] ducreyi FDAARGOS_297 [CP022037]
641865
641940
+
Thr
GGT
-
¡û
>C181062881
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
720119
720194
+
Thr
GGT
-
¡û
>C181197430
CP031237
Gammaproteobacteria
Haemophilus influenzae M12125 [CP031237]
1777444
1777519
+
Thr
GGT
-
¡û
>C181197658
CP031241
Gammaproteobacteria
Haemophilus influenzae M17648 [CP031241]
1408596
1408671
+
Thr
GGT
-
¡û
>C191208979
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
212361
212436
+
Thr
GGT
-
¡û
>W1810276944
PSSX01000012
Gammaproteobacteria
Marinobacter maroccanus N4 [PSSX]
8377
8452
+
Thr
GGT
[ENA]
¡û
>W1810295774
PTIT01000009
Gammaproteobacteria
Marinobacter persicus UTICA-S1B6 [PTIT]
119370
119295
-
Thr
GGT
[ENA]
¡û
>W1810295858
PTIV01000007
Gammaproteobacteria
Marinobacter persicus UTICA-S1B3 [PTIV]
119482
119407
-
Thr
GGT
[ENA]
¡û
>W1810425768
PYVH01000184
Gammaproteobacteria
Marinobacter sp. B9-2 [PYVH]
1161
1086
-
Thr
GGT
[ENA]
¡û
>W1810463479
PZZO01000008
Gammaproteobacteria
Marinobacter sp. PT19DW [PZZO]
184226
184151
-
Thr
GGT
[ENA]
¡û
>W1810720942
QNRO01000044
Gammaproteobacteria
Marinobacter pelagius 114J [QNRO]
3127
3202
+
Thr
GGT
[ENA]
¡û
>W1810771339
QQHE01000011
Gammaproteobacteria
Haemophilus influenzae M11578 [QQHE]
403
328
-
Thr
GGT
[ENA]
¡û
>W1810773241
QQIP01000008
Gammaproteobacteria
Haemophilus influenzae M09394 [QQIP]
448
373
-
Thr
GGT
[ENA]
¡û
>W1810786882
QRDH01000021
Gammaproteobacteria
Marinobacter flavimaris KCTC 12185 [QRDH]
8409
8484
+
Thr
GGT
[ENA]
¡û
>C151087515
CP011929
Gammaproteobacteria
Marinobacter sp. CP1 [CP011929]
2817343
2817418
+
Thr
GGT
-
¡û
>C11113759
CP001978
Gammaproteobacteria
Marinobacter adhaerens HP15 [CP001978]
367989
368064
+
Thr
GGT
[Ensembl]
¡û
>W1511480319
JWIZ01000002
Gammaproteobacteria
Muribacter muris Ackerman80-443D [JWIZ]
70803
70878
+
Thr
GGT
[ENA]
¡û
>C161032203
CP011218
Gammaproteobacteria
[Haemophilus] ducreyi NZS1 [CP011218]
48943
48868
-
Thr
GGT
-
¡û
>C161032410
CP011222
Gammaproteobacteria
[Haemophilus] ducreyi 82-029362 [CP011222]
50530
50455
-
Thr
GGT
-
¡û
>C161032456
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
48694
48619
-
Thr
GGT
-
¡û
>C161032508
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
47049
46974
-
Thr
GGT
-
¡û
>C161032557
CP011225
Gammaproteobacteria
[Haemophilus] ducreyi HMC46 [CP011225]
49418
49343
-
Thr
GGT
-
¡û
>C161032607
CP011226
Gammaproteobacteria
[Haemophilus] ducreyi HMC56 [CP011226]
48622
48547
-
Thr
GGT
-
¡û
>C161032616
CP011227
Gammaproteobacteria
[Haemophilus] ducreyi NZV1 [CP011227]
489694
489769
+
Thr
GGT
-
¡û
>C161032705
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
49076
49001
-
Thr
GGT
-
¡û
>C161032809
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
48874
48799
-
Thr
GGT
-
¡û
>C161032860
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
48385
48310
-
Thr
GGT
-
¡û
>C161087836
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
1400618
1400543
-
Thr
GGT
-
¡û
>C161087862
CP015425
Gammaproteobacteria
[Haemophilus] ducreyi VAN2 [CP015425]
737562
737637
+
Thr
GGT
-
¡û
>C161087946
CP015426
Gammaproteobacteria
[Haemophilus] ducreyi VAN3 [CP015426]
237731
237656
-
Thr
GGT
-
¡û
>C161087973
CP015427
Gammaproteobacteria
[Haemophilus] ducreyi VAN4 [CP015427]
1661779
1661854
+
Thr
GGT
-
¡û
>C161088010
CP015428
Gammaproteobacteria
[Haemophilus] ducreyi VAN5 [CP015428]
957761
957836
+
Thr
GGT
-
¡û
>C161088085
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
1394597
1394522
-
Thr
GGT
-
¡û
>C161088108
CP015430
Gammaproteobacteria
[Haemophilus] ducreyi GHA2 [CP015430]
963658
963733
+
Thr
GGT
-
¡û
>C161088193
CP015431
Gammaproteobacteria
[Haemophilus] ducreyi GHA3 [CP015431]
8630
8555
-
Thr
GGT
-
¡û
>C161088197
CP015432
Gammaproteobacteria
[Haemophilus] ducreyi GHA5 [CP015432]
87903
87978
+
Thr
GGT
-
¡û
>C161088332
CP015434
Gammaproteobacteria
[Haemophilus] ducreyi GHA9 [CP015434]
582094
582019
-
Thr
GGT
-
¡û
>W121019057
AGTR01000064
Gammaproteobacteria
Marinobacter manganoxydans MnI7-9 [AGTR]
8240
8315
+
Thr
GGT
[ENA]
¡û
>W1610749152
LMZZ01000014
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
95550
95475
-
Thr
GGT
[ENA]
¡û
>W1610801144
LORG01000017
Gammaproteobacteria
Marinobacter sp. YWL01 [LORG]
8300
8375
+
Thr
GGT
[ENA]
¡û
>W1610937234
LUOK01000001
Gammaproteobacteria
Marinobacter sp. REDSEA-S15_B16 [LUOK]
5338
5263
-
Thr
GGT
[ENA]
¡û
>W1710545481
FOBN01000006
Gammaproteobacteria
Pasteurella skyensis [FOBN]
50223
50298
+
Thr
GGT
[ENA]
¡û
>W1710553915
FOHZ01000058
Gammaproteobacteria
Marinobacter segnicrescens [FOHZ]
226
151
-
Thr
GGT
[ENA]
¡û
>W1710566642
FOSC01000011
Gammaproteobacteria
Marinobacter persicus [FOSC]
163580
163505
-
Thr
GGT
[ENA]
¡û
>W1710575078
FOYV01000007
Gammaproteobacteria
Marinobacter gudaonensis [FOYV]
8590
8665
+
Thr
GGT
[ENA]
¡û
>W1710575125
FOYW01000007
Gammaproteobacteria
Marinobacter daqiaonensis [FOYW]
3021
3096
+
Thr
GGT
[ENA]
¡û
>W1710610366
FYFA01000002
Gammaproteobacteria
Marinobacter sp. es.048 [FYFA]
1483722
1483647
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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