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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269372 (13 seq.)
>W1711724893
MTQO01000050
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
298041
298116
+
Arg
TCT
[ENA]
¡û
>W141000321
ACQP01000182
Actinomycetota
Kutzneria sp. 744 [ACQP]
79035
79108
+
Arg
TCT
[ENA]
¡û
>W141757960
JNYH01000077
Actinomycetota
Kutzneria albida [JNYH]
4954
4879
-
Arg
TCT
[ENA]
¡û
>W1810885776
QUNO01000010
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
310520
310593
+
Arg
TCT
[ENA]
¡û
>C151017648
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
1634919
1634844
-
Arg
TCT
[Ensembl]
¡û
>W2010704089
JACHIR010000001
Actinomycetota
Kutzneria kofuensis DSM 43851 [JACHIR]
2247862
2247936
+
Arg
TCT
[ENA]
¡û
>W2010740385
JACJID010000003
Actinomycetota
Kutzneria viridogrisea DSM 43850 [JACJID]
1197459
1197533
+
Arg
TCT
[ENA]
¡û
>W2110301201
JADBEI010000002
Actinomycetota
Kibdelosporangium phytohabitans DSM 104448 [JADBEI]
3458278
3458352
+
Arg
TCT
[ENA]
¡û
>W2110553315
JAGINW010000001
Actinomycetota
Kibdelosporangium banguiense DSM 46670 [JAGINW]
229900
229827
-
Arg
TCT
[ENA]
¡û
>C211321059
CP073318
Actinomycetota
Kutzneria sp. CA-103260 [CP073318]
6727332
6727406
+
Arg
TCT
-
¡û
>W1510073633
CDME01000014
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
458068
458143
+
Arg
TCT
[ENA]
¡û
>C231381383
CP097263
Actinomycetota
Kutzneria chonburiensis SMC256 [CP097263]
9336742
9336669
-
Arg
TCT
-
¡û
>C161045539
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
2448332
2448257
-
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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